Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,039,860 – 4,040,012 |
Length | 152 |
Max. P | 0.999951 |
Location | 4,039,860 – 4,039,976 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.88 |
Mean single sequence MFE | -16.78 |
Consensus MFE | -15.63 |
Energy contribution | -15.47 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.20 |
Structure conservation index | 0.93 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.752362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4039860 116 - 20766785 CCAUUUAAUGUGGCGUGUAUAUCAUUUCGAAUGCUAUCAGUGCCAAUCUCCAUAUACACGCACCGCCAAAAAACACAAAAUCAAUAAACAAACAAGCAAACAGCCGCCCU----GUCAAC .........(((((((((((((..........((.......))........))))))))((..................................)).....)))))...----...... ( -15.75) >DroSec_CAF1 22492 116 - 1 CCAUUUAAUGUGGCGUGUAUAUCAUUUCGAAUGCUAUCAGUGCCAAUCUCCAUAUACACGCACCGCCAAAAAACACAAAAUCAAUAAACAAACAAACAAACAGCCGCCUU----GUCAAC .....(((.(((((((((((((..........((.......))........))))))))((...))....................................))))).))----)..... ( -15.77) >DroSim_CAF1 24633 116 - 1 CCAUUUAAUGUGGCGUGUAUAUCAUUUCGAAUGCUAUCAGUGCCAAUCUCCAUAUACACGCACCGCCAAAAAACACAAAAUCAAUAAACAAACAAACAAACAGCCGCCCU----GUCAAC .........(((((((((((((..........((.......))........))))))))((...))....................................)))))...----...... ( -15.47) >DroEre_CAF1 21982 112 - 1 CCACUUAAUGUGGCGUGUAUAUCAUUUCGAAUGCUAUCAGUGCCAAUCUGCAUGUACACGCACCGCCAAAAAACACAAAAUCAAUAAACAAAC----AAACAGCCGCCCU----GUCAAC .(((.....)))((((((((........((......)).((((......))))))))))))................................----..((((.....))----)).... ( -18.30) >DroYak_CAF1 25582 116 - 1 CCAUUUAAUGUGGCGUGUAUAUCAUUUCGAAUGCUAUCAGUGCCAAUCUGCAUAUACACGCACCGCCAAAAAACACAAAAUCAAUAAACAAAC----AAACAGCCGCCCUGUCUGUCAAC .(((.....)))((((((((((((....((..((.......))...)))).))))))))))..............................((----(.((((.....)))).))).... ( -18.60) >consensus CCAUUUAAUGUGGCGUGUAUAUCAUUUCGAAUGCUAUCAGUGCCAAUCUCCAUAUACACGCACCGCCAAAAAACACAAAAUCAAUAAACAAACAA_CAAACAGCCGCCCU____GUCAAC .........(((((((((((((..........((.......))........))))))))((...))....................................)))))............. (-15.63 = -15.47 + -0.16)
Location | 4,039,896 – 4,040,012 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.45 |
Mean single sequence MFE | -28.46 |
Consensus MFE | -27.57 |
Energy contribution | -27.61 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -3.12 |
Structure conservation index | 0.97 |
SVM decision value | 4.80 |
SVM RNA-class probability | 0.999951 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4039896 116 - 20766785 CUCGGCAUACG----UACGUGAGUGACAACAUUAAAUAAUCCAUUUAAUGUGGCGUGUAUAUCAUUUCGAAUGCUAUCAGUGCCAAUCUCCAUAUACACGCACCGCCAAAAAACACAAAA ...(((....(----(((....)).)).(((((((((.....))))))))).((((((((((..........((.......))........))))))))))...)))............. ( -28.37) >DroSec_CAF1 22528 116 - 1 CUCGGCAUACG----UACGUGAGUGACAACAUUAAAUAAUCCAUUUAAUGUGGCGUGUAUAUCAUUUCGAAUGCUAUCAGUGCCAAUCUCCAUAUACACGCACCGCCAAAAAACACAAAA ...(((....(----(((....)).)).(((((((((.....))))))))).((((((((((..........((.......))........))))))))))...)))............. ( -28.37) >DroSim_CAF1 24669 116 - 1 CUCGGCAUACG----UACGUGAGUGACAACAUUAAAUAAUCCAUUUAAUGUGGCGUGUAUAUCAUUUCGAAUGCUAUCAGUGCCAAUCUCCAUAUACACGCACCGCCAAAAAACACAAAA ...(((....(----(((....)).)).(((((((((.....))))))))).((((((((((..........((.......))........))))))))))...)))............. ( -28.37) >DroEre_CAF1 22014 120 - 1 CUCGGCAUACGUAUGUACGUGAGUGACAACAUUAAAUAAUCCACUUAAUGUGGCGUGUAUAUCAUUUCGAAUGCUAUCAGUGCCAAUCUGCAUGUACACGCACCGCCAAAAAACACAAAA ...(((....(..((((((((...((..(((((((.........)))))))((((((.(((.(((.....))).))))).))))..))..))))))))..)...)))............. ( -28.00) >DroYak_CAF1 25618 116 - 1 CUCGGCAUACG----UACGUGAGUGACAACAUUAAAUAAUCCAUUUAAUGUGGCGUGUAUAUCAUUUCGAAUGCUAUCAGUGCCAAUCUGCAUAUACACGCACCGCCAAAAAACACAAAA ...(((....(----(((....)).)).(((((((((.....))))))))).((((((((((((....((..((.......))...)))).))))))))))...)))............. ( -29.20) >consensus CUCGGCAUACG____UACGUGAGUGACAACAUUAAAUAAUCCAUUUAAUGUGGCGUGUAUAUCAUUUCGAAUGCUAUCAGUGCCAAUCUCCAUAUACACGCACCGCCAAAAAACACAAAA ...(((.........(((....)))...(((((((((.....))))))))).((((((((((..........((.......))........))))))))))...)))............. (-27.57 = -27.61 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:10 2006