Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,038,423 – 4,038,543 |
Length | 120 |
Max. P | 0.987967 |
Location | 4,038,423 – 4,038,543 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -38.69 |
Consensus MFE | -34.20 |
Energy contribution | -34.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.13 |
Mean z-score | -1.86 |
Structure conservation index | 0.88 |
SVM decision value | 2.10 |
SVM RNA-class probability | 0.987967 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4038423 120 - 20766785 AAAGGCGUUGCCAUGCCUUUUACCUUUGGCUCCUAUUUCGCCGACGCUCAGGCUCAGUGUUUUGCUUACUUAUUCAUUUGAUAAAGUGAGGCGGAAUGCGGGGACCGCGUCCCACUUCAA ...((((.......(((..........)))........))))(((((...(((((.(((((((((((((((..((....))..)))))).))))))))).))).)))))))......... ( -38.36) >DroSec_CAF1 21009 120 - 1 AAAGGCGUUGCCAUGCCUUUUACCUUUGGCUCCUAUUUCGCCGACGCUCAGGCUCAGUGUUUUGCUUACUUAUUCAUUUGAUAAAGUAAGGCGGAAUGUGGGGACCGCGUCCCACUUCAA ((((((((....)))))))).......(((((((((((((((((((((.......))))))....((((((..((....))..))))))))))))))).)))).)).............. ( -36.80) >DroSim_CAF1 23165 120 - 1 AAAGGCGUUGCUAUGCCUUUUACCUUUGGCUCCUAUUUCCCCGACGCUCAGGCUCAGUGUUUUGCUUACUUAUUCAUUUGAUAAAGUGAGGCGGAAUGCGGGGACCGCGUCCCACUUCAA ((((((((....))))))))......(((..(.....(((((((.((....)))).(((((((((((((((..((....))..)))))).))))))))))))))....)..)))...... ( -36.70) >DroEre_CAF1 20190 120 - 1 AAAGGCGUUGCCAUGCCAUUUACCUUUGGCUCCCAUUUCGCCGGCGCUCCGCCUCAGUGUUUUGCUUACUUAUUCAUUUGAUAAAGUGAGGCGGAAUGCGGGGACCGCGUCCCACUUCAA ...((((.((....((((........))))...))...)))).(((.(((((((((((.....))).((((..((....))..)))))))))))).))).(((((...)))))....... ( -42.90) >DroYak_CAF1 24295 119 - 1 AAAGGCGAUGCCAUCCCUUUUACCUGUGGCUCCUAUUUCGCCGACGCUCCGC-UCAGUGUUUUGCUUACUUAUUCAUUUGAUAAAGUGGGGCGGAAUGCGGGGACCACGUCCCACUUCAA ...(((((.(((((...........))))).......)))))..((((((((-((((((.......))))....(((((....))))))))))))..)))(((((...)))))....... ( -38.70) >consensus AAAGGCGUUGCCAUGCCUUUUACCUUUGGCUCCUAUUUCGCCGACGCUCAGGCUCAGUGUUUUGCUUACUUAUUCAUUUGAUAAAGUGAGGCGGAAUGCGGGGACCGCGUCCCACUUCAA ((((((((....))))))))......((((((((((((((((((((((.......))))))....((((((..((....))..))))))))))))))).)))).)))............. (-34.20 = -34.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:08 2006