Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,038,222 – 4,038,337 |
Length | 115 |
Max. P | 0.986120 |
Location | 4,038,222 – 4,038,337 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.67 |
Mean single sequence MFE | -39.00 |
Consensus MFE | -34.36 |
Energy contribution | -34.20 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.90 |
Structure conservation index | 0.88 |
SVM decision value | 2.03 |
SVM RNA-class probability | 0.986120 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4038222 115 - 20766785 ACAGCUUCUGGAAUGCGAAAUGUGCCUGAGCUCAUUUCGGUCUGUGUAAAGCAAUUUCCGUAAUGAGUGCUCUCCUGCAGAGCACUUAAAAGUAUUUGGGGCCGCCCCCUUGCGC----- ...((.....((((((((((((.((....)).))))))((....((.....))....))....((((((((((.....))))))))))...))))))((((....))))..))..----- ( -37.50) >DroSec_CAF1 20808 115 - 1 ACAGCUUCUGGAAUGCGAAAUGUGCCUGAGCUCAUUUCGGUCUGUGUAAAGCAAUUUCCGUAAUGAGUGCUCUCCUGCAGAGCACUUAAAAGUAUUUGGGGCCGCCUCCCUGCGC----- ...(((((..((((((((((((.((....)).))))))((....((.....))....))....((((((((((.....))))))))))...)))))))))))(((......))).----- ( -35.90) >DroSim_CAF1 22964 115 - 1 ACAGCUUCUGGAAUGCGAAAUGUGCCUGAGCUCAUUUCGGUCUGUGUAAAGCAAUUUCCGUAAUGAGUGCUCUCCUGCAGAGCACUUAAAAGUAUUUCGGGCCGCCUCCUUGCGC----- ...((....(((..((((((((.((....)).))))))((((((.(.(((....))).)....((((((((((.....)))))))))).........)))))))).)))..))..----- ( -37.80) >DroEre_CAF1 19971 120 - 1 ACCGCUUCUGGAAUGCGAAAUGUGCCUGAGCUCAUUUCGGUCUGUGUAAAGCAAUUUCCGUAAUGAGUGCUCUCCUGCAGAGCACUUAAAAGUAUUUGGGGGCGCCUCCUUGCGCCUCCU ...((((..((((..(((((((.((....)).)))))))...(((.....)))..))))....((((((((((.....)))))))))).))))....((((((((......)))))))). ( -45.70) >DroYak_CAF1 24092 118 - 1 ACAGCUUCUGGAAUGCGAAAUGUGCCUGAGCUCAUUUCGGUCUGUGUAAAGCAAUUUCCGUAAUGAGUGCUCUCCUGCAGAGCACUUAAAAGUAUUUGGGGCUGCCUCCUUGCGCCUU-- .(((((((..((((((((((((.((....)).))))))((....((.....))....))....((((((((((.....))))))))))...)))))))))))))..............-- ( -38.10) >consensus ACAGCUUCUGGAAUGCGAAAUGUGCCUGAGCUCAUUUCGGUCUGUGUAAAGCAAUUUCCGUAAUGAGUGCUCUCCUGCAGAGCACUUAAAAGUAUUUGGGGCCGCCUCCUUGCGC_____ ......(((.((((((((((((.((....)).))))))((....((.....))....))....((((((((((.....))))))))))...)))))).))).(((......)))...... (-34.36 = -34.20 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:07 2006