| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,036,735 – 4,036,852 |
| Length | 117 |
| Max. P | 0.773513 |
| Location | 4,036,735 – 4,036,852 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 88.10 |
| Mean single sequence MFE | -27.94 |
| Consensus MFE | -21.10 |
| Energy contribution | -21.55 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.773513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4036735 117 + 20766785 AAAUCAGUCAGUCAAUGGGCUGCUGCCACUUCACAAGAAGUACAAUUAAAUCUAUUAUUU-GCGAGUGGCAGUCCCAGAUCCUUUAAAUAACUCCCAUUGUCGGCAUAACACACGAAA ......(((.(.((((((((((((((((((.(.((((.((((..........)))).)))-).)))))))))...)))...............))))))).))))............. ( -28.86) >DroSim_CAF1 21530 117 + 1 AAAUCAGUCAGUCAAUGGGCUGCUGCCACUUCACAAGAAGUACAAUUAAAUCUAUUAUUU-GUGAGUGGCAGUCCCAGAUCCUUUAAAUAACUCCCAUUGUCGGCAUAACACACGAAA ......(((.(.((((((((((((((((((.((((((.((((..........)))).)))-)))))))))))...)))...............))))))).))))............. ( -32.76) >DroYak_CAF1 22608 111 + 1 AAAUCAGUCAGUCAAUGAACGGAAGCCACUUCACAAGAAGUACAAUUAAAUCUAUGAUUUUGCGAGUGGCAUUCGCAGAUUCCUUAAAUAACUCUCA-UGUCGGCAUAACAU------ ...((..(((.....)))...)).((((((((....)))))..............((.(((((((((...))))))))).))...............-....))).......------ ( -22.20) >consensus AAAUCAGUCAGUCAAUGGGCUGCUGCCACUUCACAAGAAGUACAAUUAAAUCUAUUAUUU_GCGAGUGGCAGUCCCAGAUCCUUUAAAUAACUCCCAUUGUCGGCAUAACACACGAAA ......(((.(.(((((((..((((((((((...(((.((((..........)))).)))...))))))))))....................))))))).))))............. (-21.10 = -21.55 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:05 2006