Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,036,295 – 4,036,455 |
Length | 160 |
Max. P | 0.996622 |
Location | 4,036,295 – 4,036,415 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.64 |
Mean single sequence MFE | -30.74 |
Consensus MFE | -26.19 |
Energy contribution | -26.43 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.76 |
Structure conservation index | 0.85 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933868 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4036295 120 + 20766785 GCCUCUUUAGACCAAGUCUUUUAUGUGGUGCAUGAACACAUGCAGAUAAACCAUUCAGGUAAUGGCCACGUUACACUUUCUGGCCAUGAUUUUUUAUGCGCAAAUUAUGCACAAAGUUCA ((.....((((..((((.....((((((((((((....)))))......(((.....)))....)))))))...))))))))(((((((....))))).)).......)).......... ( -27.00) >DroSec_CAF1 18960 119 + 1 GCAUCUUUAUGCCAAGUAUUUUAUGUGGUGCAUGAACACAUGCAGAUA-ACCAUUCAGGUAAUGGCCAUGUUACACUUUCUGGCCAUGAUUUUUUAUGCGCAAAUUAUGCACAAAGUUCA ((((..((.(((((..(((((...((((((((((....))))).....-)))))..)))))(((((((.(........).))))))).........)).)))))..)))).......... ( -27.60) >DroSim_CAF1 21091 119 + 1 GCAUCUUUGGGCCAAGUCUUUUAUGUGGUGCAUGAACACAUGCAGAUA-ACCAUUCAGGUAAUGGCCACGUUACACUUUCUGGCCAUGAUUUUUUAUGCGCAAAUUAUGCACAAAGUUUA ....(((((((((((((.....((((((((((((....))))).....-(((.....)))....)))))))...)))...)))))..............(((.....))).))))).... ( -32.70) >DroEre_CAF1 18089 118 + 1 GCCUCUUUAGGCCAAGUCCUUUAUGUGGUGCAUGAACACAUGCAGAUA-ACCAUUCAGGUAAUGGCCACGUUACAGU-UCUGGCCAUGAUUUUUUAUGCGCAAAUUAUGCACAAAGUUCA .........(((((.(..((..((((((((((((....))))).....-(((.....)))....)))))))...)).-.)))))).(((..((((.((((.......)))).)))).))) ( -32.20) >DroYak_CAF1 22183 119 + 1 GCCUCUUUGGGCCAAGUCCUUUAUGUGGUGCAUGAACACAUGCAGAUA-ACCAUUCAGGUAAUGGCCACGUUACAGUUUCUGGCCAUGAUUUUUUAUGCGCAAAUUAUGCACAAAGUUCA ....((((((((((.(..((..((((((((((((....))))).....-(((.....)))....)))))))...))..).)))))..............(((.....))).))))).... ( -34.20) >consensus GCCUCUUUAGGCCAAGUCUUUUAUGUGGUGCAUGAACACAUGCAGAUA_ACCAUUCAGGUAAUGGCCACGUUACACUUUCUGGCCAUGAUUUUUUAUGCGCAAAUUAUGCACAAAGUUCA .........(((((........((((((((((((....)))))......(((.....)))....))))))).........)))))...........((.(((.....))).))....... (-26.19 = -26.43 + 0.24)
Location | 4,036,295 – 4,036,415 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.64 |
Mean single sequence MFE | -32.00 |
Consensus MFE | -28.79 |
Energy contribution | -29.03 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.06 |
Structure conservation index | 0.90 |
SVM decision value | 2.72 |
SVM RNA-class probability | 0.996622 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4036295 120 - 20766785 UGAACUUUGUGCAUAAUUUGCGCAUAAAAAAUCAUGGCCAGAAAGUGUAACGUGGCCAUUACCUGAAUGGUUUAUCUGCAUGUGUUCAUGCACCACAUAAAAGACUUGGUCUAAAGAGGC ....(((((((((.....)))))............((((((...(.....)(((((((((.....)))))......((((((....)))))))))).........))))))...)))).. ( -29.40) >DroSec_CAF1 18960 119 - 1 UGAACUUUGUGCAUAAUUUGCGCAUAAAAAAUCAUGGCCAGAAAGUGUAACAUGGCCAUUACCUGAAUGGU-UAUCUGCAUGUGUUCAUGCACCACAUAAAAUACUUGGCAUAAAGAUGC ....(((((((((.....))))).............((((...(((((...(((((((((.....))))))-))).((((((....)))))).........)))))))))..)))).... ( -31.00) >DroSim_CAF1 21091 119 - 1 UAAACUUUGUGCAUAAUUUGCGCAUAAAAAAUCAUGGCCAGAAAGUGUAACGUGGCCAUUACCUGAAUGGU-UAUCUGCAUGUGUUCAUGCACCACAUAAAAGACUUGGCCCAAAGAUGC ....(((((((((.....)))))............((((((..........(((((((((.....))))))-))).((((((....)))))).............)))))).)))).... ( -31.80) >DroEre_CAF1 18089 118 - 1 UGAACUUUGUGCAUAAUUUGCGCAUAAAAAAUCAUGGCCAGA-ACUGUAACGUGGCCAUUACCUGAAUGGU-UAUCUGCAUGUGUUCAUGCACCACAUAAAGGACUUGGCCUAAAGAGGC ....(((((((((.....)))))............((((((.-.((.....(((((((((.....))))).-....((((((....)))))))))).....))..))))))...)))).. ( -34.10) >DroYak_CAF1 22183 119 - 1 UGAACUUUGUGCAUAAUUUGCGCAUAAAAAAUCAUGGCCAGAAACUGUAACGUGGCCAUUACCUGAAUGGU-UAUCUGCAUGUGUUCAUGCACCACAUAAAGGACUUGGCCCAAAGAGGC ....(((((((((.....)))))............((((((...((.....(((((((((.....))))).-....((((((....))))))))))....))...))))))...)))).. ( -33.70) >consensus UGAACUUUGUGCAUAAUUUGCGCAUAAAAAAUCAUGGCCAGAAAGUGUAACGUGGCCAUUACCUGAAUGGU_UAUCUGCAUGUGUUCAUGCACCACAUAAAAGACUUGGCCUAAAGAGGC ....(((((((((.....)))))............((((((..........(((((((((.....)))))......((((((....)))))))))).........)))))).)))).... (-28.79 = -29.03 + 0.24)
Location | 4,036,335 – 4,036,455 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.49 |
Mean single sequence MFE | -31.44 |
Consensus MFE | -30.36 |
Energy contribution | -30.20 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.20 |
Structure conservation index | 0.97 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714400 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4036335 120 + 20766785 UGCAGAUAAACCAUUCAGGUAAUGGCCACGUUACACUUUCUGGCCAUGAUUUUUUAUGCGCAAAUUAUGCACAAAGUUCAGCUGAGCGCAAGACCCGAAAAGGGCUGCGGUAAAAUUCAA .((((.....((.(((.(((.(((((((.(........).))))))).........((((((.....))).....((((....)))))))..))).)))..)).))))............ ( -30.90) >DroSec_CAF1 19000 119 + 1 UGCAGAUA-ACCAUUCAGGUAAUGGCCAUGUUACACUUUCUGGCCAUGAUUUUUUAUGCGCAAAUUAUGCACAAAGUUCAGCUGAGCGCAAGACCCGAAAAGGGCUGCGGGAAAAUUCAA .((((...-.((.(((.(((.(((((((.(........).))))))).........((((((.....))).....((((....)))))))..))).)))..)).))))............ ( -31.60) >DroSim_CAF1 21131 119 + 1 UGCAGAUA-ACCAUUCAGGUAAUGGCCACGUUACACUUUCUGGCCAUGAUUUUUUAUGCGCAAAUUAUGCACAAAGUUUAGCUGAGCGCAAGACCCGAAAAGGGCUGCGGGAAAAUUCAA ........-.((.(((((.(((((((((.(........).))))))).........((.(((.....))).)).....)).)))))((((.(.(((.....))))))))))......... ( -31.10) >DroEre_CAF1 18129 117 + 1 UGCAGAUA-ACCAUUCAGGUAAUGGCCACGUUACAGU-UCUGGCCAUGAUUUUUUAUGCGCAAAUUAUGCACAAAGUUCAGCUGAGCGCAAGACCCGAAAAGGGCUGCGGGA-AAUUCAA .((((...-.((.(((.(((.(((((((.(.......-.)))))))).........((((((.....))).....((((....)))))))..))).)))..)).))))....-....... ( -32.00) >DroYak_CAF1 22223 119 + 1 UGCAGAUA-ACCAUUCAGGUAAUGGCCACGUUACAGUUUCUGGCCAUGAUUUUUUAUGCGCAAAUUAUGCACAAAGUUCAGCUGAGCGCAAGACCCGAAAAGGGCUGCGGGAAAAUUCAA .((((...-.((.(((.(((.(((((((.(........).))))))).........((((((.....))).....((((....)))))))..))).)))..)).))))............ ( -31.60) >consensus UGCAGAUA_ACCAUUCAGGUAAUGGCCACGUUACACUUUCUGGCCAUGAUUUUUUAUGCGCAAAUUAUGCACAAAGUUCAGCUGAGCGCAAGACCCGAAAAGGGCUGCGGGAAAAUUCAA .((((.....((.(((.(((.(((((((.(........).))))))).........((((((.....))).....((((....)))))))..))).)))..)).))))............ (-30.36 = -30.20 + -0.16)
Location | 4,036,335 – 4,036,455 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.49 |
Mean single sequence MFE | -32.16 |
Consensus MFE | -31.38 |
Energy contribution | -31.38 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.43 |
Structure conservation index | 0.98 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4036335 120 - 20766785 UUGAAUUUUACCGCAGCCCUUUUCGGGUCUUGCGCUCAGCUGAACUUUGUGCAUAAUUUGCGCAUAAAAAAUCAUGGCCAGAAAGUGUAACGUGGCCAUUACCUGAAUGGUUUAUCUGCA ...........((((((((.....))))..))))..(((.((((((.((((((.....)))))).........(((((((............))))))).........)))))).))).. ( -32.00) >DroSec_CAF1 19000 119 - 1 UUGAAUUUUCCCGCAGCCCUUUUCGGGUCUUGCGCUCAGCUGAACUUUGUGCAUAAUUUGCGCAUAAAAAAUCAUGGCCAGAAAGUGUAACAUGGCCAUUACCUGAAUGGU-UAUCUGCA ............((((.((..(((((((...((.....)).......((((((.....)))))).........(((((((............))))))).))))))).)).-...)))). ( -32.80) >DroSim_CAF1 21131 119 - 1 UUGAAUUUUCCCGCAGCCCUUUUCGGGUCUUGCGCUCAGCUAAACUUUGUGCAUAAUUUGCGCAUAAAAAAUCAUGGCCAGAAAGUGUAACGUGGCCAUUACCUGAAUGGU-UAUCUGCA ............((((.((..(((((((...((.....)).......((((((.....)))))).........(((((((............))))))).))))))).)).-...)))). ( -31.90) >DroEre_CAF1 18129 117 - 1 UUGAAUU-UCCCGCAGCCCUUUUCGGGUCUUGCGCUCAGCUGAACUUUGUGCAUAAUUUGCGCAUAAAAAAUCAUGGCCAGA-ACUGUAACGUGGCCAUUACCUGAAUGGU-UAUCUGCA .......-....((((.((..(((((((...((.....)).......((((((.....)))))).........((((((((.-.......).))))))).))))))).)).-...)))). ( -32.20) >DroYak_CAF1 22223 119 - 1 UUGAAUUUUCCCGCAGCCCUUUUCGGGUCUUGCGCUCAGCUGAACUUUGUGCAUAAUUUGCGCAUAAAAAAUCAUGGCCAGAAACUGUAACGUGGCCAUUACCUGAAUGGU-UAUCUGCA ............((((.((..(((((((...((.....)).......((((((.....)))))).........(((((((............))))))).))))))).)).-...)))). ( -31.90) >consensus UUGAAUUUUCCCGCAGCCCUUUUCGGGUCUUGCGCUCAGCUGAACUUUGUGCAUAAUUUGCGCAUAAAAAAUCAUGGCCAGAAAGUGUAACGUGGCCAUUACCUGAAUGGU_UAUCUGCA ............((((.((..(((((((...((.....)).......((((((.....)))))).........(((((((............))))))).))))))).)).....)))). (-31.38 = -31.38 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:04 2006