Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,034,522 – 4,034,642 |
Length | 120 |
Max. P | 0.814136 |
Location | 4,034,522 – 4,034,642 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.00 |
Mean single sequence MFE | -24.36 |
Consensus MFE | -23.74 |
Energy contribution | -23.74 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.29 |
Structure conservation index | 0.97 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814136 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4034522 120 + 20766785 UGCCAACUUUGUUGCACAGCUGAAAAAUAAAACGCAAGUGGAAACUCAAGUUAGCCAGGAUAUAAAUAGGAAAGCACAACGACCAGAAACGGAAGGGAAGUGAAUUAUAAAUGUUGGUAG ((((((((((((..(((.(((((........((....))(....).....)))))..................................(....)....)))....))))).))))))). ( -23.90) >DroSec_CAF1 17149 120 + 1 UGCCAACUUUGUUGCACAGCUGAAAAAUAAAACGCAAGUGGAAACUCAAGUUAGCCAGGAUAUAAAUAGGAAAGCACAACGACCAGAAACGGAAGGGAAGUGAAUUAUAAAUGUUGGUAC ((((((((((((..(((.(((((........((....))(....).....)))))..................................(....)....)))....))))).))))))). ( -23.60) >DroSim_CAF1 19296 120 + 1 UGCCAACUUUGUUGCACAGCUGAAAAAUAAAACGCAAGUGGAAACUCAAGUUAGCCAGGAUAUAAAUAGGAAAGCACAACGACCAAAAACGGAAGGGAAGUGAAUUAUAAAUGUUGGUAG ((((((((((((..(((.(((((........((....))(....).....)))))..................................(....)....)))....))))).))))))). ( -23.90) >DroEre_CAF1 16448 120 + 1 UGCCAACUUUGUUGCACAGCUGAAAAAUAAAACGCAAGUGGAAACUCAAGUUAGCCAGGAUAUAAAUAGGAAAGCACAACGACCAGAAACGGAAGGGAAGUGAAUUAUAAAUGUUGGUAG ((((((((((((..(((.(((((........((....))(....).....)))))..................................(....)....)))....))))).))))))). ( -23.90) >DroYak_CAF1 20313 120 + 1 UGCCAACUUUGUUGCACAGCUGAAAAAUAAAACGCAAGUGGAAACUCAAGUUAGCCAGGAUAUAAAUAGGAAAGCACAACGACCAGCAGCGGGUGGGAAGUGAAUUAUAAAUGUUGGUAG ((((((((((((..(((.(((((........((....))(....).....)))))...........................(((.(....).)))...)))....))))).))))))). ( -26.50) >consensus UGCCAACUUUGUUGCACAGCUGAAAAAUAAAACGCAAGUGGAAACUCAAGUUAGCCAGGAUAUAAAUAGGAAAGCACAACGACCAGAAACGGAAGGGAAGUGAAUUAUAAAUGUUGGUAG ((((((((((((..(((.(((((........((....))(....).....)))))........................(..((......))..)....)))....))))).))))))). (-23.74 = -23.74 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:58 2006