Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,031,379 – 4,031,819 |
Length | 440 |
Max. P | 0.991631 |
Location | 4,031,379 – 4,031,499 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.07 |
Mean single sequence MFE | -33.22 |
Consensus MFE | -27.30 |
Energy contribution | -28.54 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.15 |
Mean z-score | -1.37 |
Structure conservation index | 0.82 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4031379 120 - 20766785 CGGAAAAGGGAGUCGCCCGCCCACUUUUCCGGCAUUGGUAUUGACUUUGUCUGUUUACCAAACCCCUUAGGGGCACAACACCGCAAAGCAGCUUCCAAUUGUUUAAAAGGUAGUUCCUUU ((((((((((.((.....)))).))))))))(((((((..(((.((((((.((((.......((((...))))...))))..)))))))))...)))).)))...(((((.....))))) ( -33.30) >DroSec_CAF1 14071 120 - 1 CGGAAAAGGGAGUCGCCCGCCCAUUUUUCCGGCAUUGGGAUUGACUUUGUCUGUUUACCGAAGCGCUUUGGGGCACAUCACCGCAAAGCAGUUUCAAAUUGUUUAGAAGGUAGUUCCCUU ((((((((((.(.....).)))..))))))).....((((...(((...((((..((..(((((((((((.((.......)).)))))).)))))....))..)))).)))...)))).. ( -37.60) >DroSim_CAF1 16193 110 - 1 ----------AGUCGCCCGCCCACUUUUCCGGCAUUGGUAUUGACUUUGUCUGUUUACCGAACCGCUUUGGGGCACAACACCGCAAAGCAGUUUCAAAUUGUUUAAAAGGUAGUUCCCUU ----------.((.(((((((.........))).((((((..(((...)))....)))))).........))))))((((((...(((((((.....)))))))....))).)))..... ( -26.70) >DroEre_CAF1 13522 118 - 1 CGGAAAAAGGAGUCACCCGCCCACUUUUCCGGCAUU-GUAUUGACUUUGUAUGUUUACCGAACCGCUUUGGGGCACAAUACCACAAAGCAGCUUCAAAUUGUUUAA-AGGUAGCUCCUUU .....(((((((..(((.(((.........)))...-...((((....(((....)))......((((((((........)).))))))....)))).........-.)))..))))))) ( -30.00) >DroYak_CAF1 17353 119 - 1 CG-AAAAGGGAGUCACCAGCCCACUUUUCCGGGGUUGGUAUUGACUUUGUCUGUUUACCAAACCGCUUUGGGGCACAAUACCACAAAGCAGUUUCAAAUUGUUUAAAAGGUAGCUCCUUU ..-..(((((((..(((.((((.......(((..((((((..(((...)))....)))))).))).....))))...........(((((((.....)))))))....)))..))))))) ( -38.50) >consensus CGGAAAAGGGAGUCGCCCGCCCACUUUUCCGGCAUUGGUAUUGACUUUGUCUGUUUACCGAACCGCUUUGGGGCACAACACCGCAAAGCAGUUUCAAAUUGUUUAAAAGGUAGUUCCUUU .....(((((((..(((.((((.......(((..((((((..(((.......))))))))).))).....))))...........(((((((.....)))))))....)))..))))))) (-27.30 = -28.54 + 1.24)
Location | 4,031,459 – 4,031,579 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.08 |
Mean single sequence MFE | -35.92 |
Consensus MFE | -27.68 |
Energy contribution | -31.20 |
Covariance contribution | 3.52 |
Combinations/Pair | 1.03 |
Mean z-score | -2.14 |
Structure conservation index | 0.77 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.896211 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4031459 120 + 20766785 UACCAAUGCCGGAAAAGUGGGCGGGCGACUCCCUUUUCCGGUAGUGAUGCAAGGCAACAAUUGAAUUCGAAGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACAU ...((.(((((((((((.((..((....))))))))))))))).))..(((((....)..((((.(((....))).)))).........))))(((((.((((.....)))).))))).. ( -39.40) >DroSec_CAF1 14151 120 + 1 UCCCAAUGCCGGAAAAAUGGGCGGGCGACUCCCUUUUCCGGUAGUGAUGCAAGGCAACAAUUGAAUUCGAUGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACAC ...((.((((((((((..(((.((....))))))))))))))).))..((..(....)....((((((.(((.........))).))))))))(((((.((((.....)))).))))).. ( -40.30) >DroSim_CAF1 16273 107 + 1 UACCAAUGCCGGAAAAGUGGGCGGGCGACU-------------GUGAUGCAAGGCAACAAUUGAAUUCGAUGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACAC ......((((......(((.((((....))-------------))..)))..))))......((((((.(((.........))).))))))..(((((.((((.....)))).))))).. ( -26.50) >DroEre_CAF1 13601 119 + 1 UAC-AAUGCCGGAAAAGUGGGCGGGUGACUCCUUUUUCCGGUAGUGAUGCAAGGCAACAAUUGAAUUCGAUGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACAC ..(-(.((((((((((..(((.((....))))))))))))))).))..((..(....)....((((((.(((.........))).))))))))(((((.((((.....)))).))))).. ( -40.30) >DroYak_CAF1 17433 119 + 1 UACCAACCCCGGAAAAGUGGGCUGGUGACUCCCUUUU-CGGUAGUGAUGCAAGGCAACAAUUGAAUUCGAUGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACAC (((((.((((......).))).)))))(((.((....-.)).)))...((..(....)....((((((.(((.........))).))))))))(((((.((((.....)))).))))).. ( -33.10) >consensus UACCAAUGCCGGAAAAGUGGGCGGGCGACUCCCUUUUCCGGUAGUGAUGCAAGGCAACAAUUGAAUUCGAUGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACAC ...((.(((((((((((.((((....).))).))))))))))).))..((..(....)....((((((.(((.........))).))))))))(((((.((((.....)))).))))).. (-27.68 = -31.20 + 3.52)
Location | 4,031,499 – 4,031,619 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.25 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -24.76 |
Energy contribution | -26.28 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.06 |
Mean z-score | -2.00 |
Structure conservation index | 0.89 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991631 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4031499 120 + 20766785 GUAGUGAUGCAAGGCAACAAUUGAAUUCGAAGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACAUAAACGAAAGAUAACAUCGAUUCAAUCUCUAUUCAAUGGAA ((((.((((((((....)..((((.(((....))).)))).........))))(((((.((((.....)))).))))).....(....)..............))).))))......... ( -22.90) >DroSec_CAF1 14191 120 + 1 GUAGUGAUGCAAGGCAACAAUUGAAUUCGAUGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACACAAACGAAAGAUAACAAAGAUUCAAUCGCUAUUCAGUGGAA (((....)))..(....).(((((((.((((.((((((..........((((.(((((.((((.....)))).))))).))))(....)......))).))).))))..))))))).... ( -28.40) >DroSim_CAF1 16303 117 + 1 ---GUGAUGCAAGGCAACAAUUGAAUUCGAUGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACACAAACGAAAGAUAACAACGAUUCAAUCGCUAUUCAGUGGAA ---.(((.((..(....).(((((((.((.((................((((.(((((.((((.....)))).))))).))))(....)....)).))))))))).))...)))...... ( -25.30) >DroEre_CAF1 13640 120 + 1 GUAGUGAUGCAAGGCAACAAUUGAAUUCGAUGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACACAAACGAAAGAUAACAUCGAUUCAAUCACUAUUCAGUGGAA ((((((((....(....)...(((((.(((((................((((.(((((.((((.....)))).))))).))))(....)....))))))))))))))))))......... ( -32.80) >DroYak_CAF1 17472 120 + 1 GUAGUGAUGCAAGGCAACAAUUGAAUUCGAUGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACACAAAAGAAAGAUAACAUCGAUUCAAUCGCUAUUCAGUGGAA ((((((((....(....)...(((((.(((((...((.......))..((((.(((((.((((.....)))).))))).))))..........))))))))))))))))))......... ( -30.10) >consensus GUAGUGAUGCAAGGCAACAAUUGAAUUCGAUGGAACUUAAACAUGGAAUUUGCGUGUAUAUUGGCAAACGAUUUGCACACAAACGAAAGAUAACAUCGAUUCAAUCGCUAUUCAGUGGAA ((((((((....(....)...(((((.(((((................((((.(((((.((((.....)))).))))).))))(....)....))))))))))))))))))......... (-24.76 = -26.28 + 1.52)
Location | 4,031,619 – 4,031,739 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.08 |
Mean single sequence MFE | -32.16 |
Consensus MFE | -23.98 |
Energy contribution | -25.70 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.03 |
Mean z-score | -2.04 |
Structure conservation index | 0.75 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4031619 120 + 20766785 GUUGAAAGUGGUGUACAAUGGUGGUGUUCAAUACUUGUUGAAGGUAAUAAUGCUAAUGACACGGCCAUGCAAAUGAACAAACCACGAUUUCAAUUUGUGGGAGGAUUAUUUGAUGUGCAU ..........((((((((((((.(((((((((....))))).((((....))))....)))).))))).(((((((.(...((((((.......))))))...).))))))).))))))) ( -35.80) >DroSec_CAF1 14311 120 + 1 GUUAAAAGUGGUGUACAAUGGUGGUCUUCAAUACUUGUUGAAGGUAAUAAUGCUAAUGACACGGCAAUUCAAAUGAACAAACCACGAUUUCAAUUUGUGGGAGGAUUAUUUGCUGUUCAU .......((.((((.((.(((((.((((((((....))))))))......))))).)))))).))....(((((((.(...((((((.......))))))...).)))))))........ ( -29.80) >DroSim_CAF1 16420 120 + 1 GUUGAAAGUGGUGUACAAUGGUGGUCUUCAAUACUUGUUGAAGGUAAUAAUGCUAAUGACACGGCCAUGCAAAUGAACAAACCACGAUUUCAAUUUGUGGGAGGAUUAUUUGCUGUUCAU ..((((.((.((((.((.(((((.((((((((....))))))))......))))).)))))).))((.((((((((.(...((((((.......))))))...).)))))))))))))). ( -34.70) >DroEre_CAF1 13760 119 + 1 GUUGAAAGUGGCGUACAAUGGGGGUCUUCAAUACUUGUUGAAGGUAAUAAUGCUAAUGACACGGACAUGCAAAUGAACAAACCACGAUUUCAAUUUGUGGGAGGUUUACUUGUU-UGCAU ((((....((((((.(......).((((((((....)))))))).....)))))).))))......((((((((((((...((((((.......))))))...))))....)))-))))) ( -28.00) >DroYak_CAF1 17592 120 + 1 GUUGAAAGUGGCGUACAAUGGUGGUAUUCAAUACUUGUUGAAGGUAAUAAUGCUAAUGACACGGCCAUGCAAAUGAACAAACCACGAUUUCAAUUUGUGGGAGGAUUAUUUGUUGUGCAU ............((((((((((.((.((((((....))))))((((....))))......)).)))))((((((((.(...((((((.......))))))...).))))))))))))).. ( -32.50) >consensus GUUGAAAGUGGUGUACAAUGGUGGUCUUCAAUACUUGUUGAAGGUAAUAAUGCUAAUGACACGGCCAUGCAAAUGAACAAACCACGAUUUCAAUUUGUGGGAGGAUUAUUUGCUGUGCAU ............((((((((((.((.((((((....))))))((((....))))......)).)))))((((((((.(...((((((.......))))))...).))))))))))))).. (-23.98 = -25.70 + 1.72)
Location | 4,031,659 – 4,031,779 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.00 |
Mean single sequence MFE | -29.92 |
Consensus MFE | -24.84 |
Energy contribution | -25.72 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.06 |
Mean z-score | -2.09 |
Structure conservation index | 0.83 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.980011 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4031659 120 + 20766785 AAGGUAAUAAUGCUAAUGACACGGCCAUGCAAAUGAACAAACCACGAUUUCAAUUUGUGGGAGGAUUAUUUGAUGUGCAUUGUUUGCAUUUUCCUGCAAAAUGCCUUCCUGUGAUAUUUU ((((((.......(((((.((((......(((((((.(...((((((.......))))))...).))))))).)))))))))((((((......)))))).))))))............. ( -29.50) >DroSec_CAF1 14351 115 + 1 AAGGUAAUAAUGCUAAUGACACGGCAAUUCAAAUGAACAAACCACGAUUUCAAUUUGUGGGAGGAUUAUUUGCUGUUCAUUGUUUGCAUUUUCCUGCAAAAUGCCUUCCUGUGAU----- ((((((.......((((((.(((((((.....((((.(...((((((.......))))))...).)))))))))))))))))((((((......)))))).))))))........----- ( -30.10) >DroSim_CAF1 16460 120 + 1 AAGGUAAUAAUGCUAAUGACACGGCCAUGCAAAUGAACAAACCACGAUUUCAAUUUGUGGGAGGAUUAUUUGCUGUUCAUUGUUUGCAUUUUCCUGCAAAAUGCCUUCCUGUGAUAUUUU ((((((................(..((.((((((((.(...((((((.......))))))...).))))))))))..)....((((((......)))))).))))))............. ( -29.40) >DroEre_CAF1 13800 119 + 1 AAGGUAAUAAUGCUAAUGACACGGACAUGCAAAUGAACAAACCACGAUUUCAAUUUGUGGGAGGUUUACUUGUU-UGCAUUGUUUGCAUAUUCCUGCAAAAUGCCUUCCUGUGAUAUUUU ..((((....))))((((.(((((....((((.(((((...((((((.......))))))...))))).)))).-.(((((..(((((......))))))))))....))))).)))).. ( -29.70) >DroYak_CAF1 17632 120 + 1 AAGGUAAUAAUGCUAAUGACACGGCCAUGCAAAUGAACAAACCACGAUUUCAAUUUGUGGGAGGAUUAUUUGUUGUGCAUUGCUUGCAUAUUCCUGCAAAAUACCUUCCUCAAAUAUUUU ((((((.....((.((((.((((.....((((((((.(...((((((.......))))))...).))))))))))))))))))(((((......)))))..))))))............. ( -30.90) >consensus AAGGUAAUAAUGCUAAUGACACGGCCAUGCAAAUGAACAAACCACGAUUUCAAUUUGUGGGAGGAUUAUUUGCUGUGCAUUGUUUGCAUUUUCCUGCAAAAUGCCUUCCUGUGAUAUUUU ((((((.......(((((.(((((.....(((((((.(...((((((.......))))))...).)))))))))))))))))((((((......)))))).))))))............. (-24.84 = -25.72 + 0.88)
Location | 4,031,699 – 4,031,819 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.58 |
Mean single sequence MFE | -25.96 |
Consensus MFE | -18.06 |
Energy contribution | -19.18 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.87 |
Structure conservation index | 0.70 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.628000 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4031699 120 - 20766785 AUCAACUCCACAUUGUUCAUUACGGACUCUUGUGCCAUAGAAAAUAUCACAGGAAGGCAUUUUGCAGGAAAAUGCAAACAAUGCACAUCAAAUAAUCCUCCCACAAAUUGAAAUCGUGGU .......((((....((((....(((.(((((((..(((.....))))))))))..((((((((((......)))))..)))))..............))).......))))...)))). ( -24.60) >DroSec_CAF1 14391 113 - 1 AUCAACUCCACAUUGUUCUUUACGGACUCUUGUGCUAU-------AUCACAGGAAGGCAUUUUGCAGGAAAAUGCAAACAAUGAACAGCAAAUAAUCCUCCCACAAAUUGAAAUCGUGGU ..........(((((((..........(((((((....-------..)))))))..(((((((.....))))))).))))))).................((((...........)))). ( -22.70) >DroSim_CAF1 16500 120 - 1 AUCAACUCCACAUUGUUCAUUACGGACUCUUGUGCUAUAGAAAAUAUCACAGGAAGGCAUUUUGCAGGAAAAUGCAAACAAUGAACAGCAAAUAAUCCUCCCACAAAUUGAAAUCGUGGU .......((((.(((((((((......(((((((.(((.....))).)))))))..(((((((.....)))))))....))))))))).....................(....))))). ( -26.60) >DroEre_CAF1 13840 119 - 1 AUGAACUCCGCAUUGUUUGUUACGCACUCUUGUGGUAUUGAAAAUAUCACAGGAAGGCAUUUUGCAGGAAUAUGCAAACAAUGCA-AACAAGUAAACCUCCCACAAAUUGAAAUCGUGGU .........(((((((((.....((..(((((((((((.....)))))))))))..)).....(((......)))))))))))).-..............((((...........)))). ( -33.80) >DroYak_CAF1 17672 110 - 1 ----------GAUUGUUUAUUACGGACUCUUGUGGUAUUGAAAAUAUUUGAGGAAGGUAUUUUGCAGGAAUAUGCAAGCAAUGCACAACAAAUAAUCCUCCCACAAAUUGAAAUCGUGGU ----------((((((((..(((((....)))))(((((((((((((((.....)))))))))(((......)))...)))))).....))))))))...((((...........)))). ( -22.10) >consensus AUCAACUCCACAUUGUUCAUUACGGACUCUUGUGCUAUAGAAAAUAUCACAGGAAGGCAUUUUGCAGGAAAAUGCAAACAAUGCACAACAAAUAAUCCUCCCACAAAUUGAAAUCGUGGU ..........(((((((..........(((((((.(((.....))).)))))))..(((((((.....))))))).))))))).................((((...........)))). (-18.06 = -19.18 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:44 2006