Locus 875

Sequence ID 2R_DroMel_CAF1
Location 4,029,197 – 4,029,314
Length 117
Max. P 0.916036
window1516

overview

Window 6

Location 4,029,197 – 4,029,314
Length 117
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 86.16
Mean single sequence MFE -27.75
Consensus MFE -18.04
Energy contribution -18.92
Covariance contribution 0.87
Combinations/Pair 1.14
Mean z-score -2.94
Structure conservation index 0.65
SVM decision value 1.11
SVM RNA-class probability 0.916036
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4029197 117 - 20766785
GGCUUCUUGAGUGGUCGCUUUCUCAAUCUCUUCCAUUUUGAGAAGUUCCAGUUACAUUAU--GUGGGAGUCUAAUCAUUCUCAAUCUCUUUCAUUUUGAGAAGUUCCAACUCCAUUUUG
.......(((.(((..((((.(((((...........))))))))).))).)))......--...(((((.......(((((((...........)))))))......)))))...... ( -25.32)
>DroSec_CAF1 11921 117 - 1
GGCUUCUUGAGUGGUCGCUUUCUCAAUCUCUUUCAUCUUGAGAAGUUCCAGUUACAUUAU--GAAAGAGUCUAAUCAUUCUCAAUCUCUUUCAUUUGGAGAAGCUCCAACUCUAUUUUG
((((((((((.(((..((((.(((((...........))))))))).))).)).((..((--(((((((................))))))))).)))))))))).............. ( -29.89)
>DroSim_CAF1 14008 117 - 1
GGCUUCUUGAGUGGUCGCUUUCUCAAUCUCUUUCAUCUUGAGAAGUUCCAGUUACAUUAU--GAAAGAGUCUAAUCAUUCUCAAUCUCUUUCAUUUUGAGAAGCUCCAACUCCAUUUUG
((((((((((.(((..((((.(((((...........))))))))).))).)))((..((--(((((((................)))))))))..))))))))).............. ( -30.49)
>DroYak_CAF1 13824 113 - 1
GGCUUCUGGAGUGGACGCUUUGUCAAUCUCUUUCAUUUUGAAAAGUUCCAUCUCAAUUUCAAAUGGA----AAAUCACUCUCAAUCUCUUUCAUUGUGAGAAGUUCCAACUCCAUUU--
......(((((((((.(((((.((((...........))))))))))))..............((((----(.....(((.((((.......)))).)))...)))))))))))...-- ( -25.30)
>consensus
GGCUUCUUGAGUGGUCGCUUUCUCAAUCUCUUUCAUCUUGAGAAGUUCCAGUUACAUUAU__GAAAGAGUCUAAUCAUUCUCAAUCUCUUUCAUUUUGAGAAGCUCCAACUCCAUUUUG
((((((((((.(((..((((.(((((...........))))))))).))).)))........(((((((................)))))))......))))))).............. (-18.04 = -18.92 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:35 2006