Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,338,132 – 1,338,240 |
Length | 108 |
Max. P | 0.623711 |
Location | 1,338,132 – 1,338,240 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.42 |
Mean single sequence MFE | -22.41 |
Consensus MFE | -15.27 |
Energy contribution | -15.58 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.17 |
Mean z-score | -1.66 |
Structure conservation index | 0.68 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623711 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1338132 108 - 20766785 --------ACCAUUUGUUAUUUUAAUUAAUCUCAUUAAAUGGCGUCCACUUUGAGCUACAGCUUUUUGGCGAACCUUAGUUGCCCAUAUGCUGCCAGCCAACCCAACC----ACCUUCCC --------.(((((((...................)))))))........(((.(((.((((.....(((((.......))))).....))))..)))))).......----........ ( -19.41) >DroSec_CAF1 56598 111 - 1 --------GCCAUUUGUUAUUUUAAUUAAUCUCAUUAAAUGGCGUCCACUUUGAGCUACAGCUUUUUGGCGAGCUUUGGUUGCCCAUAUGCUGCCAGACAACCCAACCACC-ACCUUUCC --------((((((((...................))))))))(((......((((....))))..((((.(((..(((....)))...))))))))))............-........ ( -26.31) >DroSim_CAF1 34812 111 - 1 --------GCCAUUUGUUAUUUUAAUUAAUCUCAUUAAAUGGCGUCCACUUUGAGCUACAGCUUUUUGGUGAGCUUUGGUUGCCCAUAUGCUGCCAGACAACCCAACCACC-ACCUUUCC --------((((((((...................))))))))(..((((..((((....))))...))))..)((((((.((......)).)))))).............-........ ( -26.41) >DroYak_CAF1 25196 114 - 1 UGCGCACUAUCAUUUGUUAUUUUAAUUAAUCUCGUUUAAUGGCGUCUACUUUGAGCUACAGCUUUUUGACAAGCCUACGUUGUCCAUAUGCUGCCAGCCAACACAACCACACAC------ .((((((........)).......(((((......))))).)))).....(((.(((.((((.....(((((.......))))).....))))..)))))).............------ ( -17.50) >consensus ________ACCAUUUGUUAUUUUAAUUAAUCUCAUUAAAUGGCGUCCACUUUGAGCUACAGCUUUUUGGCGAGCCUUGGUUGCCCAUAUGCUGCCAGACAACCCAACCACC_ACCUUUCC ........((((((((...................)))))))).......(((.(((.((((.....(((.(((....)))))).....))))..))))))................... (-15.27 = -15.58 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:24 2006