Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,023,791 – 4,023,904 |
Length | 113 |
Max. P | 0.578041 |
Location | 4,023,791 – 4,023,904 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.42 |
Mean single sequence MFE | -34.68 |
Consensus MFE | -24.69 |
Energy contribution | -25.94 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.08 |
Mean z-score | -1.66 |
Structure conservation index | 0.71 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578041 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4023791 113 - 20766785 UUAUUUAAGGCCAUGGGCAACGGGAGUCCGCAAGCCCUGGCUGAAAUAUUAAAUUAUUUGCCGGCCAUAAACAGGGCUUCAUGGUCAGGCAAGGGCGCACACGCAGUAAGUA-------G .((((((.(((((.((((..(((....)))...)))))))))..............((((((((((((.((......)).)))))).)))))).(((....)))..))))))-------. ( -37.20) >DroSec_CAF1 6583 113 - 1 UUAUUUAAGGCCACGGGCAAUGGGAGUCCGCAAGCCCUGGCUGAAAUAUAAAAUUAUUUGCCGGCCAUAAACAGGGCUUCAUGGUCAGGCAAGGGCGCACACGCAGUAAGUA-------G .((((((.(((((.((((..(((....)))...)))))))))..............((((((((((((.((......)).)))))).)))))).(((....)))..))))))-------. ( -35.50) >DroSim_CAF1 8641 113 - 1 UUAUUUAAGGCCACGGGCGACGGGAGUCCGCAAGCCCUGGCUGAAAUAUAAAAUUAUUUGCCGGCCAUAAACAGGGCUUCAUGGUCAGGCAAGGGCGCACACGCAGUAAGUA-------G .((((((.(((((.((((..(((....)))...)))))))))..............((((((((((((.((......)).)))))).)))))).(((....)))..))))))-------. ( -38.30) >DroEre_CAF1 5920 101 - 1 UUAUUUAAGUCC-------------------UGGCCCUGGCUAAAAUAUUAAAUUAUUUGCCGUCCAUAAACAGGACCUCGUGGUCAGGCAACAGCGCACACGCAGUAAGUAGGCAGUAG (((((((.(.((-------------------((((((.(((..(((((......))))))))((((.......))))...).))))))))....(((....)))..)))))))....... ( -27.80) >DroYak_CAF1 8353 104 - 1 UUAUUUAAGGCCGUGG---------GUCCGCAAGCCCUGGCUGAAAUAUUAAAUUAUUUGCCGGCCAUAAACAGGGCUUCAUGGUCAGGCAAGGGCGCACACGCAGUAAGUA-------G .((((((..((.(((.---------((((...(((....)))...............(((((((((((.((......)).)))))).))))))))).)))..))..))))))-------. ( -34.60) >consensus UUAUUUAAGGCCACGGGC_A_GGGAGUCCGCAAGCCCUGGCUGAAAUAUUAAAUUAUUUGCCGGCCAUAAACAGGGCUUCAUGGUCAGGCAAGGGCGCACACGCAGUAAGUA_______G .((((((.((((((((((.......))))).(((((((((((((((((......)))))..)))))......)))))))..)))))........(((....)))..))))))........ (-24.69 = -25.94 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:22 2006