Locus 867

Sequence ID 2R_DroMel_CAF1
Location 4,021,488 – 4,021,608
Length 120
Max. P 0.870447
window1500

overview

Window 0

Location 4,021,488 – 4,021,608
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.75
Mean single sequence MFE -35.48
Consensus MFE -32.53
Energy contribution -32.77
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.92
SVM decision value 0.87
SVM RNA-class probability 0.870447
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4021488 120 + 20766785
UCCCUAGCAAUCUGCCAGCAUGUAGCCGUGGAUGUGGUUGCCGCUGUCUAGUUCCGAUGUUAAUGCUUUACGCAUAGCGUGGCUUAAUUAUUUUUGCCAUCUCAGCCGCUCCACGUUCAC
......((.((.((....)).)).)).((((((((((..((.((((............((((.(((.....)))))))(((((..((....))..)))))..)))).)).)))))))))) ( -36.10)
>DroSec_CAF1 4300 120 + 1
UCCCUAGCAAUCUGCCAGCAUGUAGCCGUGGAUGUGGUUGCCGCUGUCUAGUUCCGAUGUUAAUGCUUUACGCAUAGCGUGGCUUAAUUAUUUUUGCCAUCUCAGCCGCUCCACGUUCAC
......((.((.((....)).)).)).((((((((((..((.((((............((((.(((.....)))))))(((((..((....))..)))))..)))).)).)))))))))) ( -36.10)
>DroSim_CAF1 6356 120 + 1
UCCCUAGCAAUCUGCCAGCAUGUAGCCGUGGAUGUGGUUGCCGCUGUCUAGUUCCGAUGUUAAUGCUUUACGCAUAGCGUGGCUUAAUUAUUUUUGCCAUCUCAGCCGCUCCACGUUCAC
......((.((.((....)).)).)).((((((((((..((.((((............((((.(((.....)))))))(((((..((....))..)))))..)))).)).)))))))))) ( -36.10)
>DroYak_CAF1 5945 109 + 1
GCCCUAGCAAUCUGC-----------CGUGGAUGUGGUUGCCGCUGUCUAGAUCCGAUGUUAAUGCUUUAAGCAUAGCGUGGCUUAAUUAUUUUUGCCAUCUCAGCCGCUACACGUUCAC
......((.....))-----------.(((((((((...((.((((...((((...((((((.(((.....)))))))))(((..((....))..))))))))))).))..))))))))) ( -33.60)
>consensus
UCCCUAGCAAUCUGCCAGCAUGUAGCCGUGGAUGUGGUUGCCGCUGUCUAGUUCCGAUGUUAAUGCUUUACGCAUAGCGUGGCUUAAUUAUUUUUGCCAUCUCAGCCGCUCCACGUUCAC
......((.....))............((((((((((..((.((((............((((.(((.....)))))))(((((..((....))..)))))..)))).)).)))))))))) (-32.53 = -32.77 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:19 2006