Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,020,944 – 4,021,063 |
Length | 119 |
Max. P | 0.915071 |
Location | 4,020,944 – 4,021,063 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 93.84 |
Mean single sequence MFE | -41.23 |
Consensus MFE | -36.99 |
Energy contribution | -37.10 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.50 |
Structure conservation index | 0.90 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4020944 119 + 20766785 AAGGGCCAAUUAAAGUGGCCGAGAGAGGAAAUCGUUCCAGCCACUCGCUCUGGAGAUGAUCAGAGUGGGCCUGAUAACGCUGAUAACGAGAAUGGAAGCGCAAGCAGCCUGAUAGUCAA ..(((((......(((((((....).((((....)))).))))))((((((((......)))))))))))))(((..((.......)).....((..((....))..)).....))).. ( -39.90) >DroSec_CAF1 3775 119 + 1 GAGGGCCAAUUAAAGUGGCCGAGAGAGGAAAUCGUUCCAGCCACACGCUCUGGAGAUGAUCGGAGUGGGCCUGAUAGCGCUGAUAACGAGAAUGGAAGCGCAAGCAGCCAGAUAGUCAU ..(((((.......((((((....).((((....)))).))))).((((((((......))))))))))))).................((.(((..((....))..))).....)).. ( -40.90) >DroSim_CAF1 5832 119 + 1 GAGGGCCAAUUAAAGUGGCCGAGAGCGGAAAUCGUUACAGCCACACGCUCUGGAGAUGAUCAGAGUGGGCCUUAUAGCGCUGAUAACGCGAAGGGAAGCGCAAGCAGCCAGAUAGUCAU .((((((.......(((((....((((.....))))...))))).((((((((......))))))))))))))...(((.......)))....((..((....))..)).......... ( -42.90) >consensus GAGGGCCAAUUAAAGUGGCCGAGAGAGGAAAUCGUUCCAGCCACACGCUCUGGAGAUGAUCAGAGUGGGCCUGAUAGCGCUGAUAACGAGAAUGGAAGCGCAAGCAGCCAGAUAGUCAU ..(((((.......((((((....).((((....)))).))))).((((((((......))))))))))))).....................((..((....))..)).......... (-36.99 = -37.10 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:17 2006