Locus 862

Sequence ID 2R_DroMel_CAF1
Location 4,017,450 – 4,017,564
Length 114
Max. P 0.621611
window1492

overview

Window 2

Location 4,017,450 – 4,017,564
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.19
Mean single sequence MFE -22.78
Consensus MFE -18.70
Energy contribution -18.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.82
SVM decision value 0.18
SVM RNA-class probability 0.621611
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4017450 114 - 20766785
AACCCUUUUACGAUGUACUAAACUCAACGCUCUCCAAGGUCUCUGGUCAGCAACAAUGGUACGGGCUU------CUCAUAAAAGUCGAAAAUCAAAAUGGCAUUUUUCGACACCAUCAAA
...........((((.............((((.(((..((..((....))..))..)))...))))..------.........((((((((............))))))))..))))... ( -21.60)
>DroSec_CAF1 338 114 - 1
AACCCUUUUACGAUGUACUAAAUUCAACGCUCUCCAAGGUCGCUGGUCAGCAACAAUGGCACGGGCUU------CUCAUAAAAGUCGAAAAUCAAAAUGGCAUUUUUCGACACCAUCAAA
...........((((.............((((.(((..((.(((....))).))..)))...))))..------.........((((((((............))))))))..))))... ( -24.70)
>DroSim_CAF1 2390 114 - 1
AACCCUUUUACGAUGUACUAAAUUCAACGCUCUCCAAGGUCGCUGGUCAGCAACAAUGGCACGGGCUU------CUCAUAAAAGUCGAAAAUCAAAAUGGCAUUUUUCGACACCAUCAAA
...........((((.............((((.(((..((.(((....))).))..)))...))))..------.........((((((((............))))))))..))))... ( -24.70)
>DroEre_CAF1 318 120 - 1
AACCCUUUUACGAUGUACUAAAUUCAACGCUCUCCAAGGUCUCUGGUCAGCAACAAUGCCACGGAGUUCUCCAUCUCAUAAAAGUCGAAAAUCAAAAUGGCAUUUUUCGACACCAUCAAA
...........((((......................((.(((((....(((....)))..)))))....))...........((((((((............))))))))..))))... ( -21.90)
>DroYak_CAF1 2151 114 - 1
AACCCUUUUACGAUGUACUAAAUUCAACGCUCUCCAAGGUCUCUGGUCAGCAACAAUGCCACGGGCUC------CUCAUAAAAGUCGAAAAUCAAAAUGGCAUUUUUCGACACCAUCAAA
...........((((......................(((((.(((.((.......))))).))))).------.........((((((((............))))))))..))))... ( -21.00)
>consensus
AACCCUUUUACGAUGUACUAAAUUCAACGCUCUCCAAGGUCUCUGGUCAGCAACAAUGGCACGGGCUU______CUCAUAAAAGUCGAAAAUCAAAAUGGCAUUUUUCGACACCAUCAAA
...........((((.............(((..(((.......)))..)))................................((((((((............))))))))..))))... (-18.70 = -18.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:11 2006