Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,017,306 – 4,017,410 |
Length | 104 |
Max. P | 0.979411 |
Location | 4,017,306 – 4,017,410 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.53 |
Mean single sequence MFE | -40.38 |
Consensus MFE | -32.04 |
Energy contribution | -33.10 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.15 |
Mean z-score | -2.68 |
Structure conservation index | 0.79 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979411 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4017306 104 - 20766785 ----------------CGCAAAUCCGCAUAUGAGCCAUGGCUGUGCAGUUAACUCAUUAAAAACGGCCAAAAAACAAGGGCCGGCGAUGGGGCGUAUGCGUAACAAUGUUGGCGUUUUUA ----------------(((.....((((((((..((((.((.(((.((....)))))......(((((..........))))))).))))..))))))))((((...)))))))...... ( -33.50) >DroSec_CAF1 178 120 - 1 GGAAUGCCGGAAAAACCGCAAAUCCGCAUGUGAGUCAUGGCUGUGCAGUUAACUCAUUAAAAACGGCCAAAAAACAAGGGCCGGCGAUGGAGCGUAUGCGUAACAUUGUUGGCGCUUUUA (((.(((.((.....)))))..)))............(((((((....((((....))))..)))))))......(((.((((((((((..(((....)))..)))))))))).)))... ( -39.90) >DroSim_CAF1 2230 120 - 1 GGAAUGCCGGAAAAACCGCAAAUCCGCAUGUGAGCCAUGGCUGUGCAGUUAACUCAUUAAAAACGGCCAAAAAACAAGAGCCGGCGAUGGGGCGUAUGCGUAACAUUGUUGGCGCUUUUA (((.(((.((.....)))))..)))......((((..(((((((....((((....))))..)))))))..........((((((((((..(((....)))..))))))))))))))... ( -41.30) >DroEre_CAF1 159 119 - 1 GGAACGCCGGGAAAACCGCAAAUCCUCAUGUGAGCCUUGGCCGCGCAGUUAACUCAUUAAAAACGGCGGAAAAACAAG-GCCGGCGAUGGGGCGUAUGCGUAACAUUGUCGGCGUUUCUA ((((((((((.((...((((.((((((((((..((((((.((((...(((...........))).)))).....))))-))..)).)))))).)).)))).....)).)))))))))).. ( -46.80) >consensus GGAAUGCCGGAAAAACCGCAAAUCCGCAUGUGAGCCAUGGCUGUGCAGUUAACUCAUUAAAAACGGCCAAAAAACAAGGGCCGGCGAUGGGGCGUAUGCGUAACAUUGUUGGCGCUUUUA (((....(((.....)))....)))......((((..(((((((....((((....))))..)))))))..........((((((((((..(((....)))..))))))))))))))... (-32.04 = -33.10 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:10 2006