Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,337,946 – 1,338,064 |
Length | 118 |
Max. P | 0.506169 |
Location | 1,337,946 – 1,338,064 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.92 |
Mean single sequence MFE | -27.28 |
Consensus MFE | -24.68 |
Energy contribution | -24.08 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.13 |
Mean z-score | -1.11 |
Structure conservation index | 0.90 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1337946 118 + 20766785 AAGGGAUAACACGGAAUCUUUUCAAA--AAAUUCAGCAAAGGCGUCCGGGUUUUCCAGUUGCGAGCACAAUAUGGCCAAAACAAAGCUCAAUAUGCUCAUAAUCAGAUGAAGCCGCCCAU ..(((......((((..((((((...--.......).)))))..))))(((((((..((((.(((((......(((.........))).....))))).))))..))..))))).))).. ( -25.40) >DroSec_CAF1 56404 117 + 1 AAGGGAUAACACGGAAUCUUUUCAAA--AAAUUCAGCAAAGGCGUCCGGGCU-UCCAGUUGCGAGCACAAUAUGGCCAAAACAAAGCUCAAUAUGCUCAUAAUCAGAUGAAGCCGCCCAU ..(((......((((..((((((...--.......).)))))..))))((((-((..((((.(((((......(((.........))).....))))).)))).....)))))).))).. ( -28.70) >DroSim_CAF1 34618 117 + 1 AAGGGAUAACACGGAAUCUUUUCAAA--AAAUUCAGCAAAGGCGUCCGGGCU-UCCAGUUGCGAGCACAAUAUGGCCAAAACAAAGCUCAAUAUGCUCAUAAUCAGAUGAAGCCGCCCAU ..(((......((((..((((((...--.......).)))))..))))((((-((..((((.(((((......(((.........))).....))))).)))).....)))))).))).. ( -28.70) >DroEre_CAF1 37853 117 + 1 AAGGGAUAACACGGAAUCUUUUCAAA--AAAUUCAGCAAGGCCGUCCGGGCU-UCCAGUUGCGAGCACAAUAUGGCCAAAACAAAGCUCGAUGUGCUCAUAAUCAGAUGAAGUCGCCCAU ..(((......((((..((((.(...--.......).))))...))))((((-((..((((.(((((((....(((.........)))...))))))).)))).....)))))).))).. ( -29.90) >DroYak_CAF1 25014 119 + 1 GAGGGAUAACACUGAAUCUUUUUAAAAAAAAUCCAGAAAGGGCGUCCGGGUU-UCCAGUUGCGAGCACAAUAUGGCCAAAACAAAGCUCAAUAUGCUCAUAAUCAGAUGAAGCCGCCCAU ...((((.....((((....))))......)))).....((((.....((((-((..((((.(((((......(((.........))).....))))).)))).....)))))))))).. ( -23.70) >consensus AAGGGAUAACACGGAAUCUUUUCAAA__AAAUUCAGCAAAGGCGUCCGGGCU_UCCAGUUGCGAGCACAAUAUGGCCAAAACAAAGCUCAAUAUGCUCAUAAUCAGAUGAAGCCGCCCAU ..(((......((((..((((.(............).))))...))))((((.((..((((.(((((......(((.........))).....))))).))))..))...)))).))).. (-24.68 = -24.08 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:22 2006