Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,015,139 – 4,015,240 |
Length | 101 |
Max. P | 0.986512 |
Location | 4,015,139 – 4,015,240 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 97.39 |
Mean single sequence MFE | -33.60 |
Consensus MFE | -32.70 |
Energy contribution | -32.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.96 |
Structure conservation index | 0.97 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986512 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4015139 101 + 20766785 UGAGUCCCAAGUGUCGAUGGCUGAUAACAGCCGGAAGCCAAGUACAG--AAGCCUCGACGGCCACAGGGGCGAAAGCUCAAAAGACAAAGACUUUGGGGAAAA ....(((((((.(((..((((((....))))))........((....--..(((.....))).....((((....)))).....))...)))))))))).... ( -32.70) >DroSim_CAF1 246 103 + 1 UGAGUCCCAAGUGUCGAUGGCUGAUAACAGCCGGAAGCCAAGUACAGAGAAGCCUCGACGGCCACAGGGGCGAAAGCUCAAAAGACAAAGACUUUGGGGAAAA ....(((((((.(((..((((((....))))))...(((..((...(((....))).))))).....((((....))))..........)))))))))).... ( -35.00) >DroYak_CAF1 23 100 + 1 UGAGUCCCAAGUGUCGAUGGCUGAUAACAGCCGGAAGCCAAGUACAG---AGCCUCAACGGCCACAGGGGCGAAAGCUCAAAAGACAAAGACUUUGGGGAAAA ....(((((((.(((..((((((....))))))........((...(---.(((.....))))....((((....)))).....))...)))))))))).... ( -33.10) >consensus UGAGUCCCAAGUGUCGAUGGCUGAUAACAGCCGGAAGCCAAGUACAG__AAGCCUCGACGGCCACAGGGGCGAAAGCUCAAAAGACAAAGACUUUGGGGAAAA ....(((((((.(((..((((((....))))))........((........(((.....))).....((((....)))).....))...)))))))))).... (-32.70 = -32.70 + -0.00)
Location | 4,015,139 – 4,015,240 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 97.39 |
Mean single sequence MFE | -29.52 |
Consensus MFE | -29.05 |
Energy contribution | -29.05 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.84 |
Structure conservation index | 0.98 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842949 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4015139 101 - 20766785 UUUUCCCCAAAGUCUUUGUCUUUUGAGCUUUCGCCCCUGUGGCCGUCGAGGCUU--CUGUACUUGGCUUCCGGCUGUUAUCAGCCAUCGACACUUGGGACUCA ...((((.((((.(((........))))))).(((.....))).(((((((((.--........)))))).(((((....)))))...)))....)))).... ( -28.90) >DroSim_CAF1 246 103 - 1 UUUUCCCCAAAGUCUUUGUCUUUUGAGCUUUCGCCCCUGUGGCCGUCGAGGCUUCUCUGUACUUGGCUUCCGGCUGUUAUCAGCCAUCGACACUUGGGACUCA .....(((((.(((..........(((((...........((((.....))))...........)))))..(((((....)))))...)))..)))))..... ( -29.05) >DroYak_CAF1 23 100 - 1 UUUUCCCCAAAGUCUUUGUCUUUUGAGCUUUCGCCCCUGUGGCCGUUGAGGCU---CUGUACUUGGCUUCCGGCUGUUAUCAGCCAUCGACACUUGGGACUCA .....(((((.(((...(((....(((((((.(((.....)))....))))))---).......)))....(((((....)))))...)))..)))))..... ( -30.60) >consensus UUUUCCCCAAAGUCUUUGUCUUUUGAGCUUUCGCCCCUGUGGCCGUCGAGGCUU__CUGUACUUGGCUUCCGGCUGUUAUCAGCCAUCGACACUUGGGACUCA .....(((((.(((..........(((((...........((((.....))))...........)))))..(((((....)))))...)))..)))))..... (-29.05 = -29.05 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:02 2006