Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,014,863 – 4,014,954 |
Length | 91 |
Max. P | 0.899118 |
Location | 4,014,863 – 4,014,954 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 82.10 |
Mean single sequence MFE | -21.73 |
Consensus MFE | -15.50 |
Energy contribution | -15.25 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.06 |
Mean z-score | -2.07 |
Structure conservation index | 0.71 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899118 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4014863 91 + 20766785 AAGGGGAAAAGGGAAAAGGGGAAAGGGAAACGUGGCCCACGAGUCAAUCAGGUUCGAUGGAAAAAAUGGUUCAAUAAAGUCAACACCCCUG .(((((............(((..(.(....).)..))).(((..(.....)..))).............................))))). ( -23.30) >DroSec_CAF1 23515 84 + 1 AAGGGGCAAGGGGAAG-------GGGGAAACAUGGCCCACUAGUCAAUCAGGUUCGAUGGAAAAAAUGGUUCAAUAAAGUCAACACCCCUG .(((((..(((((...-------..(....)....))).))....(((((..(((....)))....)))))..............))))). ( -19.50) >DroEre_CAF1 21386 81 + 1 CAGGGGUAAGGGGAAAC---------AACUCGUGGGCCA-GAGUCAAUCAGGAUCGGUGGAAAAAAUGGUUCAAUAAAGUCAACACCCCUG (((((((..(((.....---------..))).(((((((-...((.(((......))).)).....)))))))...........))))))) ( -24.50) >DroYak_CAF1 22740 77 + 1 AAGGGGAAAAGGGAAAC--------------GUGGCCCACGAGUCAAUCAGGUUCGGUGGAAAAAAUGGUUCAAUAAAGUCAACACCCCUA .(((((.....(....)--------------.((((((((((..(.....)..)).)))).....((......))...))))...))))). ( -19.60) >consensus AAGGGGAAAAGGGAAAC_________GAAACGUGGCCCACGAGUCAAUCAGGUUCGAUGGAAAAAAUGGUUCAAUAAAGUCAACACCCCUG .(((((..........................((..(((....((.(((......))).)).....)))..)).....(....).))))). (-15.50 = -15.25 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:01 2006