Locus 857

Sequence ID 2R_DroMel_CAF1
Location 4,014,863 – 4,014,954
Length 91
Max. P 0.899118
window1481

overview

Window 1

Location 4,014,863 – 4,014,954
Length 91
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 82.10
Mean single sequence MFE -21.73
Consensus MFE -15.50
Energy contribution -15.25
Covariance contribution -0.25
Combinations/Pair 1.06
Mean z-score -2.07
Structure conservation index 0.71
SVM decision value 1.01
SVM RNA-class probability 0.899118
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4014863 91 + 20766785
AAGGGGAAAAGGGAAAAGGGGAAAGGGAAACGUGGCCCACGAGUCAAUCAGGUUCGAUGGAAAAAAUGGUUCAAUAAAGUCAACACCCCUG
.(((((............(((..(.(....).)..))).(((..(.....)..))).............................))))). ( -23.30)
>DroSec_CAF1 23515 84 + 1
AAGGGGCAAGGGGAAG-------GGGGAAACAUGGCCCACUAGUCAAUCAGGUUCGAUGGAAAAAAUGGUUCAAUAAAGUCAACACCCCUG
.(((((..(((((...-------..(....)....))).))....(((((..(((....)))....)))))..............))))). ( -19.50)
>DroEre_CAF1 21386 81 + 1
CAGGGGUAAGGGGAAAC---------AACUCGUGGGCCA-GAGUCAAUCAGGAUCGGUGGAAAAAAUGGUUCAAUAAAGUCAACACCCCUG
(((((((..(((.....---------..))).(((((((-...((.(((......))).)).....)))))))...........))))))) ( -24.50)
>DroYak_CAF1 22740 77 + 1
AAGGGGAAAAGGGAAAC--------------GUGGCCCACGAGUCAAUCAGGUUCGGUGGAAAAAAUGGUUCAAUAAAGUCAACACCCCUA
.(((((.....(....)--------------.((((((((((..(.....)..)).)))).....((......))...))))...))))). ( -19.60)
>consensus
AAGGGGAAAAGGGAAAC_________GAAACGUGGCCCACGAGUCAAUCAGGUUCGAUGGAAAAAAUGGUUCAAUAAAGUCAACACCCCUG
.(((((..........................((..(((....((.(((......))).)).....)))..)).....(....).))))). (-15.50 = -15.25 +  -0.25) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:01 2006