| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,001,266 – 4,001,377 |
| Length | 111 |
| Max. P | 0.810185 |
| Location | 4,001,266 – 4,001,377 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 84.92 |
| Mean single sequence MFE | -26.34 |
| Consensus MFE | -16.20 |
| Energy contribution | -16.36 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.810185 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4001266 111 - 20766785 CACCAACAGAAUAAAAUGAAAUUAAAAUGGUCCGAUGUCGGGGGCCAAACAAAAUAAAGGCGUAUUGAGUUGUGCCAUGUUUCAGGUGGAAAAACCAGCUGCAAUAU----AAUU ...........................((((((........))))))...........((((((......))))))(((((.(((.(((.....))).))).)))))----.... ( -24.60) >DroSec_CAF1 11216 111 - 1 CACCAACAGAAUAAAAUGAAAUUAAAUUGGUCCGAUAUCGGUGGCCAAACAAAAUAAAGGCGCAUUGAGUUGUGCCAUGUUGCAGGUGGAAAAACUAGCUGCAAUAU----AAAU ..........................((((((((....)))..)))))..........((((((......))))))(((((((((.(((.....))).)))))))))----.... ( -32.80) >DroSim_CAF1 15185 110 - 1 CACCAACAGAAUAAAAUGAAAUUAAAUUGGUCCGAUGUCGGGGGCCAAACAAAAUAAAGGCGCAUUGAGUUGUGCCAUGUUGCAGGUGGAA-AACUAGCUGCAAUAU----AAAU ..........................(((((((........)))))))..........((((((......))))))(((((((((.(((..-..))).)))))))))----.... ( -34.70) >DroEre_CAF1 9237 111 - 1 CGCCAACAGAAUA-AAUGAAAUUAAAUUGGACCGAUGCAGGUGGUCGAA--AAAUAAAAGCACAUUGAAUUGGGCCGGGUUUCAGGUGGAA-AACUAUCUACAAUAUAUGUAAAU .....(((.....-..(((((((....(((.(((((.((((((.(....--.......).))).))).))))).)))))))))).(((((.-.....)))))......))).... ( -19.50) >DroYak_CAF1 9671 107 - 1 CAGCAACAAAAUAAAAUGAAAUUAAAAUGGUCCGAUGUAGGUGGCCGAA--AAAUAAAGACGCAUUGAAUUGUGUCAC-CUACAGGUGAAA-AACUAGCUACAAUAU----AAAU .(((...............................(((((((((((((.--.(((........)))...))).)))))-)))))(((....-.))).))).......----.... ( -20.10) >consensus CACCAACAGAAUAAAAUGAAAUUAAAUUGGUCCGAUGUCGGUGGCCAAACAAAAUAAAGGCGCAUUGAGUUGUGCCAUGUUGCAGGUGGAA_AACUAGCUGCAAUAU____AAAU ((((.......................(((((((....)))..))))...........((((((......))))))........))))........................... (-16.20 = -16.36 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:00 2006