Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,999,145 – 3,999,239 |
Length | 94 |
Max. P | 0.749690 |
Location | 3,999,145 – 3,999,239 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 90.85 |
Mean single sequence MFE | -31.60 |
Consensus MFE | -22.02 |
Energy contribution | -23.90 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.05 |
Mean z-score | -2.44 |
Structure conservation index | 0.70 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661710 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3999145 94 + 20766785 UGGUGACCUGGCCCAAGCCGGGAAACCAAUUUCACGCACACAUAAACCGUUUGGUUAGAGAAGGAUCCGCCCACAAACACUUGGGGCAGGAAGU ((((..((((((....))))))..))))................((((....)))).........(((((((.(((....))))))).)))... ( -30.40) >DroSec_CAF1 9137 94 + 1 UGGUGACCUGGCCCAAGCCGGGAAACCAAUUUCACGCACACAUAAACCGUUCGGUUAGAGGAGGAUCCGCCCACAAACACUUGGGCCAGGCACU .((((.(((((((((((..((....))........((.......((((....))))...((.....)))).........))))))))))))))) ( -39.90) >DroSim_CAF1 13102 94 + 1 UGGUGACCUGACCCAAGCCGGGAAACCAAUUUCACGCACACAUAAACCGUUCGGUUAGAGGAGGAUCCGCCCACAAACACUUGGGCCAGGCACU .((((.((((.((((((..((....))........((.......((((....))))...((.....)))).........)))))).)))))))) ( -32.80) >DroEre_CAF1 7121 93 + 1 UGGUGAACCGGCCAAAGCCGGGAAACCAAUUUCACGCACACAUAAACUGCUCGGUUAGCGGAGGAUCCGCCCACAAACACUUG-GCCAGGAACU .((....))((((((((((((....))........(((.........)))..)))).((((.....))))..........)))-)))....... ( -30.40) >DroYak_CAF1 7467 94 + 1 CGGGAACCUGGCCAAAGCCAGGAAACCAAUUUCACGCACAUAUAAACCGUUUUGUUAGAGGAGGAUUCGCCCACAAACACUUGGGCCAGGAACU .((...((((((....))))))...))..((((.............((.((((....)))).))....(((((........)))))..)))).. ( -24.50) >consensus UGGUGACCUGGCCCAAGCCGGGAAACCAAUUUCACGCACACAUAAACCGUUCGGUUAGAGGAGGAUCCGCCCACAAACACUUGGGCCAGGAACU ......(((((((((((((((....)).................((((....))))...)).((......)).......))))))))))).... (-22.02 = -23.90 + 1.88)
Location | 3,999,145 – 3,999,239 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 90.85 |
Mean single sequence MFE | -33.38 |
Consensus MFE | -26.96 |
Energy contribution | -27.76 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.17 |
Mean z-score | -1.57 |
Structure conservation index | 0.81 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3999145 94 - 20766785 ACUUCCUGCCCCAAGUGUUUGUGGGCGGAUCCUUCUCUAACCAAACGGUUUAUGUGUGCGUGAAAUUGGUUUCCCGGCUUGGGCCAGGUCACCA ....((((.(((((((.....((((.(((....)))..((((((....((((((....)))))).)))))).))))))))))).))))...... ( -29.00) >DroSec_CAF1 9137 94 - 1 AGUGCCUGGCCCAAGUGUUUGUGGGCGGAUCCUCCUCUAACCGAACGGUUUAUGUGUGCGUGAAAUUGGUUUCCCGGCUUGGGCCAGGUCACCA .(((((((((((((((.....((((.((.....))...((((((....((((((....)))))).)))))).)))))))))))))))).))).. ( -41.40) >DroSim_CAF1 13102 94 - 1 AGUGCCUGGCCCAAGUGUUUGUGGGCGGAUCCUCCUCUAACCGAACGGUUUAUGUGUGCGUGAAAUUGGUUUCCCGGCUUGGGUCAGGUCACCA .(((((((((((((((.....((((.((.....))...((((((....((((((....)))))).)))))).)))))))))))))))).))).. ( -38.70) >DroEre_CAF1 7121 93 - 1 AGUUCCUGGC-CAAGUGUUUGUGGGCGGAUCCUCCGCUAACCGAGCAGUUUAUGUGUGCGUGAAAUUGGUUUCCCGGCUUUGGCCGGUUCACCA .....(((((-((((.(((.(.((((((.....)))).((((((....((((((....)))))).)))))).)))))))))))))))....... ( -32.30) >DroYak_CAF1 7467 94 - 1 AGUUCCUGGCCCAAGUGUUUGUGGGCGAAUCCUCCUCUAACAAAACGGUUUAUAUGUGCGUGAAAUUGGUUUCCUGGCUUUGGCCAGGUUCCCG .(..(((((((.((((.((((((((.((....)))))..))))).((((((.(((....)))))))))........)))).)))))))..)... ( -25.50) >consensus AGUUCCUGGCCCAAGUGUUUGUGGGCGGAUCCUCCUCUAACCGAACGGUUUAUGUGUGCGUGAAAUUGGUUUCCCGGCUUGGGCCAGGUCACCA ....((((((((((((.....((((.((.....))...((((((....((((((....)))))).)))))).))))))))))))))))...... (-26.96 = -27.76 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:59 2006