| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,991,206 – 3,991,310 |
| Length | 104 |
| Max. P | 0.578579 |
| Location | 3,991,206 – 3,991,310 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 75.59 |
| Mean single sequence MFE | -30.38 |
| Consensus MFE | -22.24 |
| Energy contribution | -22.22 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3991206 104 + 20766785 CGCAGCGGAACGUGGUUGGCGGUUCCGAAGUAGAGCGGUACAAAAGCCAGCCAAAUCACACAAGUCGUGUACAUGGUGAAUCCUGUAACAA-UA-----GGGUUAAG-UAA----- (((....((...((((((((.((.(((........))).))....))))))))..))((((.....)))).....)))((((((((....)-))-----)))))...-...----- ( -32.30) >DroPse_CAF1 38583 107 + 1 CGCAGGGGCACAUGGUUGGCGGUUCCAAAGUAUAGCGGCACAAAUGCCAGCCAAAUCACGCAGGUCGUGUACAUGGUGAAGCCUGUAAGGAGUA--UG-GGGAAUCA-GGC----- .((....((.((....))))((((((..........((((....))))..(((..((..((((((....(((...)))..))))))...))...--))-))))))).-.))----- ( -28.40) >DroWil_CAF1 38663 108 + 1 CGCAGGGGCACAUGAUUGGCGGUUCCAAAAUAUAAUGGCACAAAUGCCAGCCAAAUGACACAAGUGGUGUACAUGGUGAAGCCUGAGAAAAAUG--CCAAAAAAAGG-AAG----- ..((((..(((....((((((....).........(((((....))))))))))(((((((.....)))).))).)))...)))).........--((.......))-...----- ( -26.70) >DroMoj_CAF1 56215 116 + 1 CGGAGCGGCACGUGGUUGGCGGUGCCGAAGUAGAGCGGCACAAAGGCCAGCCAAAUGACGCAGGUGGUGUACAUGGUGAAGCCUGGAACGAAUUAGCAGAUUGAAUGGGCAUUAAG ....(((.((..((((((((.((((((........))))))....))))))))..)).)))...(((((..(((((.....)).......((((....))))..)))..))))).. ( -38.70) >DroAna_CAF1 34882 104 + 1 CGGAGCGGGACGUGGUUGGCGGUUCCAAAGUAGAGUGGGACGAAGGCCAGCCAGAUCACACAGGUCGUGUACAUGGUGAAACCUACAAUAA-GA-----GGAAAUGA-GAA----- ....(..((...((((((((.((((((........))))))....))))))))..((((.((.((.....)).))))))..))..).....-..-----........-...----- ( -27.80) >DroPer_CAF1 39125 107 + 1 CGCAGGGGCACAUGGUUGGCGGUUCCAAAGUAUAGCGGCACAAAUGCCAGCCAAAUCACGCAGGUAGUGUACAUGGUGAAGCCUGUAAGGAGUA--UG-GGGAAUCA-GGC----- .((....((.((....))))((((((..........((((....))))..(((..((..((((((....(((...)))..))))))...))...--))-))))))).-.))----- ( -28.40) >consensus CGCAGCGGCACAUGGUUGGCGGUUCCAAAGUAGAGCGGCACAAAUGCCAGCCAAAUCACACAGGUCGUGUACAUGGUGAAGCCUGUAACAA_UA_____GGGAAACA_GAA_____ ......(((...((((((((.((.(((........))).))....))))))))....((((.....))))..........)))................................. (-22.24 = -22.22 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:55 2006