Locus 851

Sequence ID 2R_DroMel_CAF1
Location 3,987,422 – 3,987,524
Length 102
Max. P 0.748913
window1474

overview

Window 4

Location 3,987,422 – 3,987,524
Length 102
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 79.29
Mean single sequence MFE -33.25
Consensus MFE -15.66
Energy contribution -17.41
Covariance contribution 1.75
Combinations/Pair 1.29
Mean z-score -2.40
Structure conservation index 0.47
SVM decision value 0.47
SVM RNA-class probability 0.748913
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3987422 102 - 20766785
GAUGGCGAUGUGGCAAC---AGAGCAAGUCGUGGCCAACAAUAAUAAAAUCAAUCAGCGACAACAUGGCCAGCCGGCCGUGGCAUUU---GCCAUCACAUCGACUAAC
(((((((((.((....)---).)((..(((((........................)))))..(((((((....)))))))))..))---))))))............ ( -34.56)
>DroVir_CAF1 52610 98 - 1
-------CUGAGCCAACCGACGAGCAGGUUGUGGCCAACAACAACAAAAUCAAUCAGCAGCAACAUGGCCAGGCCAAUGUUGUUGUGGUA---GUCAGCACGGCCAAC
-------.((.(((..(.(((((....(((((........)))))....)).((((.((((((((((((...))).))))))))))))).---))).)...))))).. ( -31.50)
>DroSim_CAF1 64021 102 - 1
GAUGGCGAUGUGGCAAC---AGAGAAAGUCGUGGCCAACAAUAAUAAAAUCAAUCAGCGGCAACAUGGCCAGCCGGCCGUGGCAUUU---GCCAUCACAUCGACUAAC
..((((((((((((.((---.((.....)))).)))......................((((((((((((....)))))))....))---)))...)))))).))).. ( -32.90)
>DroEre_CAF1 33652 102 - 1
GACGGCGAUGUGGCAAC---GGAGCAAGUCGUGGCCAACAAUAAUAAAAUCAAUCAGCGCCAACAUGGCCAGCCAGCCGUGGCCUUU---GCCAUCACAUCGACCAAC
...(((((((((((((.---((.((......(((((....................).)))).((((((......))))))))))))---)))...)))))).))... ( -32.05)
>DroYak_CAF1 33712 102 - 1
GAUGGCGAUGUGGCAAC---GGAGCAAGUCGUAGCCAACAAUAAUAAAAUCAAUCAGCGGCAACAUGGCCAGCCGGCCGUGGCAUUU---GCCAUCACAUCGACUAAC
..((((((((((((.((---((......)))).)))......................((((((((((((....)))))))....))---)))...)))))).))).. ( -36.10)
>DroAna_CAF1 31857 102 - 1
GCUGGCGAUGAGGUUGU---CGAGAAAGUUGUGGCCAACAAUAACAAAAUCAAUCAGCGGCAACAUGGCCAAGCCGCCGUAGGCUUC---GCCAUUCCAACGGCCAAC
(((((((((......))---)).....(((((........)))))........)))))(((...(((((.(((((......))))).---))))).......)))... ( -32.40)
>consensus
GAUGGCGAUGUGGCAAC___AGAGCAAGUCGUGGCCAACAAUAAUAAAAUCAAUCAGCGGCAACAUGGCCAGCCGGCCGUGGCAUUU___GCCAUCACAUCGACCAAC
...((((((((((..............(((((........................)))))..((((((......)))))).............)))))))).))... (-15.66 = -17.41 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:54 2006