Locus 850

Sequence ID 2R_DroMel_CAF1
Location 3,982,255 – 3,982,351
Length 96
Max. P 0.608841
window1473

overview

Window 3

Location 3,982,255 – 3,982,351
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 79.58
Mean single sequence MFE -31.20
Consensus MFE -17.39
Energy contribution -17.37
Covariance contribution -0.02
Combinations/Pair 1.36
Mean z-score -1.85
Structure conservation index 0.56
SVM decision value 0.15
SVM RNA-class probability 0.608841
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3982255 96 + 20766785
CUCCGGGAAGGACCAUGACCAACAUGUUCAUGGCAUCUGCAUUGGCGGUUCCAUAUCGACUAGCCGCCCGUCGCUGGUCGUGGUUUCCUAUAACCC
....((((..(((((((((((.(((....)))......((((.(((((((...........))))))).)).)))))))))))))))))....... ( -34.70)
>DroVir_CAF1 46797 96 + 1
CGCCGGGCAUAAUCAUGACCAGCAUAUUCAUGGCAUCCGUGUUGGCCACCCCAUAGCGACUGGCCGCUCUGCGCUGAUCGUGAUUGCCAAUCACCC
.....((((..(((((((.((((.....(((((...)))))..(((((..(......)..))))).......)))).)))))))))))........ ( -32.40)
>DroGri_CAF1 29478 96 + 1
CACCGGGCAGAAUCAUGACUAUCAUAUUCAUGGCAUCUAGAUUGGACACGCCAUAACGACUAGCCGAUCUUCGCUGGUCGUGAUUGCCAAUUACCC
.....((((((((.(((.....)))))))(((((.(((.....)))...))))).(((((((((........)))))))))...))))........ ( -29.50)
>DroWil_CAF1 30037 96 + 1
CUCCAGGCAGGAUCAUCACCAACAUAUUCAUGGCAUCUGCAUUUGCGGCACCGUAACGACUGGCAGCCCUACGCUGAUCAUGGUUGCCAAUUACCC
.....((((........((((........((((...((((....))))..))))......(((((((.....)))).)))))))))))........ ( -21.40)
>DroMoj_CAF1 42129 96 + 1
CACCAGGCAGAAUCAUGACCAGCAUGUUCAUGGCGUCCGUGUUGCCGGCGCCAUAGCGACUGGCCGCGCGGCGCUGAUCGUGAUUGCCAAUCACCC
.....((((..(((((((.((((..((.....))(.((((((.((((((((....))).))))).))))))))))).)))))))))))........ ( -44.40)
>DroAna_CAF1 26813 96 + 1
CUCCCGGCAGGAUCAUAACUAACAUAUUCAUGGCAUCCGCAUUUGCGGUUCCAUACCGACUGGCUGCCCUUCUCUGGUCGUGGUUGCCAAUCACCC
.....((((..(((((.............((((...((((....))))..))))...(((..(..........)..))))))))))))........ ( -24.80)
>consensus
CUCCGGGCAGAAUCAUGACCAACAUAUUCAUGGCAUCCGCAUUGGCGGCGCCAUAACGACUGGCCGCCCUUCGCUGAUCGUGAUUGCCAAUCACCC
.....((((..(((((.............((((...((((....))))..))))...((..(((........)))..)))))))))))........ (-17.39 = -17.37 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:53 2006