Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,337,750 – 1,337,866 |
Length | 116 |
Max. P | 0.549439 |
Location | 1,337,750 – 1,337,866 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.58 |
Mean single sequence MFE | -33.06 |
Consensus MFE | -25.44 |
Energy contribution | -26.64 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.09 |
Mean z-score | -1.50 |
Structure conservation index | 0.77 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549439 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1337750 116 + 20766785 CAGCUGGCUAUAAUAAGCGGUCAUUUCAUGCUCACAGCAAGGA----GGAUGCUGGGACGGAUGAAUGGCCGUACAUGGAUUCUCGGAUGCAUGACAAACAUGCUUCAAUAAUUUCAUUA ................(((((((((.(((.(((.(((((....----...))))).)).).))))))))))))..(((((......((.(((((.....))))).))......))))).. ( -33.80) >DroSec_CAF1 56223 102 + 1 CAG--------------CGGUCAUUUCAUGCUCACAGCAAGGA----GGAUGCUGGGACGGAUGAAUGGUCGUACAUGGAUUCUCGGAUGCAUGACAAACAUGCUUCAAUAAUUUCAUUA ..(--------------((..((((.(((.(((.(((((....----...))))).)).).)))))))..)))..(((((......((.(((((.....))))).))......))))).. ( -30.60) >DroSim_CAF1 34423 116 + 1 CAGCUGGCUAUAAUAAGCGGUCAUUUCAUGCUCACAGCAAGGA----GGAUGCUGGGACGGAUGAAUGGCCGUACAUGGAUUCUCGGAUGCAUGACAAACAUGCUUCAAUAAUUUCAUUA ................(((((((((.(((.(((.(((((....----...))))).)).).))))))))))))..(((((......((.(((((.....))))).))......))))).. ( -33.80) >DroEre_CAF1 37671 120 + 1 CAGCUGGCUAUAAUAAGCGGUCAUUUCAUGCUCAGCGUAAGGAUGCUGGAUGCUGGGUCGGAUGAAUGGCCGUACACGGAUUCUCGGAUGCAUGACAAACAUGCUUCAAUAAUUUCAUUA ................(((((((((.((((((((((((.((....))..)))))))))...))))))))))))....(((......((.(((((.....))))).))......))).... ( -35.60) >DroYak_CAF1 24821 113 + 1 CAGCUGGCUAUAAUAAGCGGUCAUUUCAUGCUCAGGGUAAGGAUG-------CUGGGACGGAUGAAUGGCCGUACAUGGAUUCUCGGAAGCAUGACAAACAUGCAUCAAUAAUUUCAUUA ................((((((((((..(((((((.((....)).-------))))).))...))))))))))..(((((......((.(((((.....))))).))......))))).. ( -31.50) >consensus CAGCUGGCUAUAAUAAGCGGUCAUUUCAUGCUCACAGCAAGGA____GGAUGCUGGGACGGAUGAAUGGCCGUACAUGGAUUCUCGGAUGCAUGACAAACAUGCUUCAAUAAUUUCAUUA ................(((((((((.(((.(((.(((((...........))))).)).).))))))))))))..(((((......((.(((((.....))))).))......))))).. (-25.44 = -26.64 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:21 2006