Locus 85

Sequence ID 2R_DroMel_CAF1
Location 1,337,750 – 1,337,866
Length 116
Max. P 0.549439
window175

overview

Window 5

Location 1,337,750 – 1,337,866
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.58
Mean single sequence MFE -33.06
Consensus MFE -25.44
Energy contribution -26.64
Covariance contribution 1.20
Combinations/Pair 1.09
Mean z-score -1.50
Structure conservation index 0.77
SVM decision value 0.03
SVM RNA-class probability 0.549439
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1337750 116 + 20766785
CAGCUGGCUAUAAUAAGCGGUCAUUUCAUGCUCACAGCAAGGA----GGAUGCUGGGACGGAUGAAUGGCCGUACAUGGAUUCUCGGAUGCAUGACAAACAUGCUUCAAUAAUUUCAUUA
................(((((((((.(((.(((.(((((....----...))))).)).).))))))))))))..(((((......((.(((((.....))))).))......))))).. ( -33.80)
>DroSec_CAF1 56223 102 + 1
CAG--------------CGGUCAUUUCAUGCUCACAGCAAGGA----GGAUGCUGGGACGGAUGAAUGGUCGUACAUGGAUUCUCGGAUGCAUGACAAACAUGCUUCAAUAAUUUCAUUA
..(--------------((..((((.(((.(((.(((((....----...))))).)).).)))))))..)))..(((((......((.(((((.....))))).))......))))).. ( -30.60)
>DroSim_CAF1 34423 116 + 1
CAGCUGGCUAUAAUAAGCGGUCAUUUCAUGCUCACAGCAAGGA----GGAUGCUGGGACGGAUGAAUGGCCGUACAUGGAUUCUCGGAUGCAUGACAAACAUGCUUCAAUAAUUUCAUUA
................(((((((((.(((.(((.(((((....----...))))).)).).))))))))))))..(((((......((.(((((.....))))).))......))))).. ( -33.80)
>DroEre_CAF1 37671 120 + 1
CAGCUGGCUAUAAUAAGCGGUCAUUUCAUGCUCAGCGUAAGGAUGCUGGAUGCUGGGUCGGAUGAAUGGCCGUACACGGAUUCUCGGAUGCAUGACAAACAUGCUUCAAUAAUUUCAUUA
................(((((((((.((((((((((((.((....))..)))))))))...))))))))))))....(((......((.(((((.....))))).))......))).... ( -35.60)
>DroYak_CAF1 24821 113 + 1
CAGCUGGCUAUAAUAAGCGGUCAUUUCAUGCUCAGGGUAAGGAUG-------CUGGGACGGAUGAAUGGCCGUACAUGGAUUCUCGGAAGCAUGACAAACAUGCAUCAAUAAUUUCAUUA
................((((((((((..(((((((.((....)).-------))))).))...))))))))))..(((((......((.(((((.....))))).))......))))).. ( -31.50)
>consensus
CAGCUGGCUAUAAUAAGCGGUCAUUUCAUGCUCACAGCAAGGA____GGAUGCUGGGACGGAUGAAUGGCCGUACAUGGAUUCUCGGAUGCAUGACAAACAUGCUUCAAUAAUUUCAUUA
................(((((((((.(((.(((.(((((...........))))).)).).))))))))))))..(((((......((.(((((.....))))).))......))))).. (-25.44 = -26.64 +   1.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:21 2006