Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,972,412 – 3,972,510 |
Length | 98 |
Max. P | 0.698392 |
Location | 3,972,412 – 3,972,510 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 79.03 |
Mean single sequence MFE | -28.03 |
Consensus MFE | -19.09 |
Energy contribution | -18.45 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.17 |
Mean z-score | -1.38 |
Structure conservation index | 0.68 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698392 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3972412 98 - 20766785 UAGGUUCACAUUCUCGAUGGAGUCGAAGAUGUUGAAGAGAGAGAUGUAGACGAAGUCGCCGCUCAGGUGGCUGCAAAGAAUAGCCAUUGGAGAACGUU------------ ..(((((((((..(((((...)))))..))).))).............(((...)))))).(((..(((((((.......)))))))..)))......------------ ( -26.30) >DroPse_CAF1 22459 94 - 1 CAGAUCCACAUUCUCGAUGGAGUCGAAAAUGUUGAACAGCGAAAUGUAGACGUAGUUGCCGCUCAGGUAACUGAAA---------UUUGGA--ACUU---AUCUAUAU-- ..(.((.(((((.(((((...))))).))))).)).)......(((((((...((((.(((.((((....))))..---------..))))--))).---.)))))))-- ( -22.40) >DroSec_CAF1 21067 110 - 1 CAGGUUCACAUUCUCGAUGGAGUCGAAGAUGUUGAAGAGAGAGAUGUACACGAAGUCGCCGCUCAGGUGGCUGCAAAGAAUGGCAAUUGGAGAACGUUUAAUUAGUAUUU ....(((((((..(((((...)))))..))).)))).....((((((.(.((((((((((.....)))))))((........))..)))..).))))))........... ( -25.70) >DroSim_CAF1 27215 103 - 1 CAGGUUCACAUUCUCGAUGGAGUCGAAGAUGUUGAAGAGAGAGAUGUAGACGAAGUCGCCGCUCAGGUGGCUGCAAAGAAUGGCAAUUGGAGAACGUUUAAUU------- ....(((((((..(((((...)))))..))).))))..........((((((.(((((((.....)))))))((........))..........))))))...------- ( -26.70) >DroEre_CAF1 20046 99 - 1 CAGGUCCACAUUCUCGAUGGAGUCGAAGAUGUUGAACAGAGAGAUGUAGACGUAGUCGCCGCUCAGGUGGCUGCAAGGAAUGGUAUU-----------UCAUUUGUAUUU ...(((.((((.(((..((...((((.....)))).))..))))))).)))(((((((((.....))))))))).(.((((((....-----------)))))).).... ( -33.30) >DroYak_CAF1 20040 108 - 1 CAGGUUCACAUUCUCGAUGGAGUCGAAGAUGUUGAACAGCGAGAUGUAAACGUAGUCGCCGAGCAGGUGGCUGCAAAGAAUGGUAUUUGG--AACGUUUAAUUUGUAAUU ...((((((((..(((((...)))))..))).))))).(((((...((((((((((((((.....))))))).((((........)))).--.))))))).))))).... ( -33.80) >consensus CAGGUUCACAUUCUCGAUGGAGUCGAAGAUGUUGAACAGAGAGAUGUAGACGAAGUCGCCGCUCAGGUGGCUGCAAAGAAUGGCAAUUGGA_AACGUUUAAUUUGUAU__ ....((.((((..(((((...)))))..)))).))..................(((((((.....)))))))...................................... (-19.09 = -18.45 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:52 2006