Locus 849

Sequence ID 2R_DroMel_CAF1
Location 3,972,412 – 3,972,510
Length 98
Max. P 0.698392
window1472

overview

Window 2

Location 3,972,412 – 3,972,510
Length 98
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 79.03
Mean single sequence MFE -28.03
Consensus MFE -19.09
Energy contribution -18.45
Covariance contribution -0.64
Combinations/Pair 1.17
Mean z-score -1.38
Structure conservation index 0.68
SVM decision value 0.35
SVM RNA-class probability 0.698392
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3972412 98 - 20766785
UAGGUUCACAUUCUCGAUGGAGUCGAAGAUGUUGAAGAGAGAGAUGUAGACGAAGUCGCCGCUCAGGUGGCUGCAAAGAAUAGCCAUUGGAGAACGUU------------
..(((((((((..(((((...)))))..))).))).............(((...)))))).(((..(((((((.......)))))))..)))......------------ ( -26.30)
>DroPse_CAF1 22459 94 - 1
CAGAUCCACAUUCUCGAUGGAGUCGAAAAUGUUGAACAGCGAAAUGUAGACGUAGUUGCCGCUCAGGUAACUGAAA---------UUUGGA--ACUU---AUCUAUAU--
..(.((.(((((.(((((...))))).))))).)).)......(((((((...((((.(((.((((....))))..---------..))))--))).---.)))))))-- ( -22.40)
>DroSec_CAF1 21067 110 - 1
CAGGUUCACAUUCUCGAUGGAGUCGAAGAUGUUGAAGAGAGAGAUGUACACGAAGUCGCCGCUCAGGUGGCUGCAAAGAAUGGCAAUUGGAGAACGUUUAAUUAGUAUUU
....(((((((..(((((...)))))..))).)))).....((((((.(.((((((((((.....)))))))((........))..)))..).))))))........... ( -25.70)
>DroSim_CAF1 27215 103 - 1
CAGGUUCACAUUCUCGAUGGAGUCGAAGAUGUUGAAGAGAGAGAUGUAGACGAAGUCGCCGCUCAGGUGGCUGCAAAGAAUGGCAAUUGGAGAACGUUUAAUU-------
....(((((((..(((((...)))))..))).))))..........((((((.(((((((.....)))))))((........))..........))))))...------- ( -26.70)
>DroEre_CAF1 20046 99 - 1
CAGGUCCACAUUCUCGAUGGAGUCGAAGAUGUUGAACAGAGAGAUGUAGACGUAGUCGCCGCUCAGGUGGCUGCAAGGAAUGGUAUU-----------UCAUUUGUAUUU
...(((.((((.(((..((...((((.....)))).))..))))))).)))(((((((((.....))))))))).(.((((((....-----------)))))).).... ( -33.30)
>DroYak_CAF1 20040 108 - 1
CAGGUUCACAUUCUCGAUGGAGUCGAAGAUGUUGAACAGCGAGAUGUAAACGUAGUCGCCGAGCAGGUGGCUGCAAAGAAUGGUAUUUGG--AACGUUUAAUUUGUAAUU
...((((((((..(((((...)))))..))).))))).(((((...((((((((((((((.....))))))).((((........)))).--.))))))).))))).... ( -33.80)
>consensus
CAGGUUCACAUUCUCGAUGGAGUCGAAGAUGUUGAACAGAGAGAUGUAGACGAAGUCGCCGCUCAGGUGGCUGCAAAGAAUGGCAAUUGGA_AACGUUUAAUUUGUAU__
....((.((((..(((((...)))))..)))).))..................(((((((.....)))))))...................................... (-19.09 = -18.45 +  -0.64) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:52 2006