Locus 848

Sequence ID 2R_DroMel_CAF1
Location 3,971,764 – 3,971,861
Length 97
Max. P 0.749387
window1471

overview

Window 1

Location 3,971,764 – 3,971,861
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 80.30
Mean single sequence MFE -22.48
Consensus MFE -16.05
Energy contribution -15.88
Covariance contribution -0.17
Combinations/Pair 1.17
Mean z-score -1.53
Structure conservation index 0.71
SVM decision value 0.47
SVM RNA-class probability 0.749387
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3971764 97 - 20766785
UUUUAGUGGUCAACUAAUUGCUAAUCGCUAAUUAACUUACCACCCAGUUGGCGCUCUUCCCCUCUGGCAUCAGAUUAAGCCAGUUGUUAAUCAAGUA
.....(((((....(((((((.....)).)))))....)))))((((..((........))..)))).....((((((........))))))..... ( -18.30)
>DroSec_CAF1 20390 97 - 1
UUGUAGUGAUCAACUAACUGCUAAUCGCUAAUUAACUUACCACCCAGUUGGCGCUCUUGCCCUCGGGCAUCAGAUUAAGCCAGUUGUUAAUCAAGUA
......((((.(((.((((((((((((((((((............))))))).....((((....))))...)))).)).)))))))).)))).... ( -25.40)
>DroSim_CAF1 25634 97 - 1
UUGUAGUGGUCAACUAACUGCUAAUCGCUAAUUAACUUACCACCCAGUUGGCGCUCUUGCCCUCGGGCAUCAGAUUAAGCCAGUUGUUAAUCAAGUA
......((((.(((.((((((((((((((((((............))))))).....((((....))))...)))).)).)))))))).)))).... ( -24.80)
>DroEre_CAF1 19395 97 - 1
UUGAAAUUAUCAACUUAUUGCUAAUUGCUUAUAAGCUUACCACCCAGUUGGCGCUCUUGCCCUCGGGCAUCAGAUUAAGCCAGUUGUUAAUCAAGUA
((((.........(((((.((.....))..))))).........((..((((.((..((((....))))..)).....))))..))....))))... ( -22.40)
>DroYak_CAF1 19391 82 - 1
---------------UGUUGCUAAUCGCUUGAUAGCUUACCACCCAGUUGGCGCUCUUGCCCUCGGGCAUCAGAUUAAGCCAAUUGUUAAUCAAGUA
---------------...........(((((((.(.....)...((((((((.((..((((....))))..)).....))))))))...))))))). ( -23.90)
>DroPer_CAF1 22164 81 - 1
UUGGAGU----------------CUCGCGAUAGCACUUACCACCCAGUUGGCGCUCUUCCCAGCUGGCAUAAGGUUAAGCCAGUUGUUAAUCAGGUA
.......----------------...((....))...((((..((((((((........)))))))).....((((((........)))))).)))) ( -20.10)
>consensus
UUGUAGUG_UCAACUAAUUGCUAAUCGCUAAUUAACUUACCACCCAGUUGGCGCUCUUGCCCUCGGGCAUCAGAUUAAGCCAGUUGUUAAUCAAGUA
..................................((((......((((((((.((..((((....))))..)).....))))))))......)))). (-16.05 = -15.88 +  -0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:51 2006