Locus 846

Sequence ID 2R_DroMel_CAF1
Location 3,959,403 – 3,959,495
Length 92
Max. P 0.770304
window1468

overview

Window 8

Location 3,959,403 – 3,959,495
Length 92
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 79.83
Mean single sequence MFE -33.93
Consensus MFE -20.18
Energy contribution -20.93
Covariance contribution 0.75
Combinations/Pair 1.22
Mean z-score -1.97
Structure conservation index 0.59
SVM decision value 0.53
SVM RNA-class probability 0.770304
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3959403 92 + 20766785
UGAACAAAUUCCAAGGCCCAAGUAUGCUGCCUUUGGUGGGCAAUGCUCAUCAGAUGGGAAACACUCCCACAGGUAGGUGCUCCAUCUAGACA----------
..............((....(((((.(((((((((((((((...))))))))))(((((.....)))))..)))))))))))).........---------- ( -28.30)
>DroPse_CAF1 6513 101 + 1
UGAACAAGUUCAAGGGGCCGAAGGUCUUGCCUGUCGUUGGCAAUGCCCAUCAGCUGGGCAGGACUCCUCCAGGUGGGUGAGCGGA-AAUGGAGUUUAGAGAG
.......((((((((((((.......(((((.......)))))((((((.....)))))))).)))))((....)).)))))...-................ ( -30.90)
>DroSec_CAF1 6350 102 + 1
UGAACAAGUUCCAGGGCCCAAGUAUGCUGCCUUUGGUGGGCAAUGCCCAUCAGAUGGGAAAGACUCCCACAGGUAGGUGCUCCAUCCGGACAAACUAGACAA
......((((((.(((....(((((.(((((((((((((((...))))))))))(((((.....)))))..))))))))))...))))))...)))...... ( -35.80)
>DroSim_CAF1 9784 102 + 1
UCAACAAGUUCCAGGGCCCAAGUAUGCUGCCUUUGGUGGGCAAUGCCCAUCAGAUGGGAAAGACUCCCACAGGUAGGUGCUCCAUCCGGACAAUCUAGACAA
.......((.((.(((....(((((.(((((((((((((((...))))))))))(((((.....)))))..))))))))))...)))))))........... ( -35.50)
>DroEre_CAF1 6005 101 + 1
UGGAUAAGUUCCAGGGCCCAAGAAUGCUGCCUGUGGUGGGCAAUGCUCAUCAGAUGGGAAAGACUCCCACAGGUAAGUGCUCCAC-AGUACAAUCUAGGGAA
((((.....))))...(((.(((....((((((((((((((...)))))))....((((.....))))))))))).(((((....-)))))..))).))).. ( -38.20)
>DroYak_CAF1 6815 101 + 1
UGAACAAGUUCCAGGGGCCAAGUAUGCUGCCUGUGGUGGGCAAUGCUCAUCAGAUGGGAAAAACUCCCACAGGUAAGUGCGCCAU-GUGACAGUCUAGACAA
.......((..((..(((...((((..((((((((((((((...)))))))....((((.....))))))))))).))))))).)-)..))........... ( -34.90)
>consensus
UGAACAAGUUCCAGGGCCCAAGUAUGCUGCCUGUGGUGGGCAAUGCCCAUCAGAUGGGAAAGACUCCCACAGGUAGGUGCUCCAU_AGGACAAUCUAGACAA
.....................((((.((((((.((((((((...))))))))..(((((.....))))).))))))))))...................... (-20.18 = -20.93 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:48 2006