Locus 845

Sequence ID 2R_DroMel_CAF1
Location 3,957,305 – 3,957,406
Length 101
Max. P 0.777060
window1467

overview

Window 7

Location 3,957,305 – 3,957,406
Length 101
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 70.94
Mean single sequence MFE -21.50
Consensus MFE -12.99
Energy contribution -12.93
Covariance contribution -0.05
Combinations/Pair 1.32
Mean z-score -1.38
Structure conservation index 0.60
SVM decision value 0.55
SVM RNA-class probability 0.777060
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3957305 101 - 20766785
AGGGUGUGUUAGUUGAUAAAUGUCGGACUUUGUGAUCAGCGUCUGACUGCUGAGUAUGAACUGAAGAAGUACGAA----AAUAAU----AGAGUCA-CAUGAUUACAUGA
.((.(.(((((.(((.((....((((..((..((.((((((......)))))).))..)))))).....))))).----..))))----).).)).-((((....)))). ( -21.20)
>DroSec_CAF1 4272 94 - 1
CGGGUGUGUUAGUUGAUAAAUGUCGGACUUUGUGAUCAGCGUUUGACUGCUGAGUAUGAACUGAAGAAGUACGAA----AAUAUU----AGAGUCA-U-------CAUUA
..((((......((((((....(((.((((((((.((((((......)))))).)))........))))).))).----..))))----))...))-)-------).... ( -17.70)
>DroEre_CAF1 3975 91 - 1
GGGAUGUGUUAGUUCAUAAAUGUCGGACUUUGUGAUCAGCGUCUGGCUGCUGAGUAUGAACUAAA---GUAUGAA----AAUUUU----AGAAUCA-U-------UAUGA
...(((..((((((((((...(((((((.(((....))).))))))).......)))))))))).---.)))...----......----.......-.-------..... ( -22.30)
>DroWil_CAF1 3762 99 - 1
UGGAUGCAAUAGAUCAUAGAUGUCUGACUUUUGUAUUAAAGUUUGACUGCUGAGUAUAUACUAUAAAAAUUCAAA----GAUACUUAGCAAAUUCAAU-------UCCUA
.(((.................(((.((((((......)))))).)))((((((((((..................----.))))))))))........-------))).. ( -20.51)
>DroYak_CAF1 4737 94 - 1
UGGAUGUGUUAGUUGAUAAAUGUCGGACUUUGUGAUCAGCGUCUGACUGCUGAGUAUGAACUAAAGAGGUAUGAA----AGUAUU----AGAAUCA-C-------CAUGA
(((.....((((((.(((...(((((((.(((....))).))))))).......))).))))))...(((((...----.)))))----.......-)-------))... ( -22.30)
>DroAna_CAF1 3292 89 - 1
GGGAUGGGUAAGGUCAUAGAUGUCGGACUUUGAGAUCAACGUCUGGCUACUGAGUAUAUACUAGAAAAGAAAGAUCUCUAUUAUC----CGAA-----------------
.((((((...(((((.(((..(((((((.(((....))).)))))))..)))(((....)))..........)))))...)))))----)...----------------- ( -25.00)
>consensus
GGGAUGUGUUAGUUCAUAAAUGUCGGACUUUGUGAUCAGCGUCUGACUGCUGAGUAUGAACUAAAGAAGUACGAA____AAUAUU____AGAAUCA_U_______CAUGA
........((((((.(((...(((((((.(((....))).))))))).......))).)))))).............................................. (-12.99 = -12.93 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:47 2006