Locus 844

Sequence ID 2R_DroMel_CAF1
Location 3,956,798 – 3,956,901
Length 103
Max. P 0.991195
window1466

overview

Window 6

Location 3,956,798 – 3,956,901
Length 103
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 88.69
Mean single sequence MFE -35.03
Consensus MFE -31.67
Energy contribution -31.28
Covariance contribution -0.39
Combinations/Pair 1.21
Mean z-score -2.47
Structure conservation index 0.90
SVM decision value 2.25
SVM RNA-class probability 0.991195
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3956798 103 + 20766785
CCUGAAAUUACCCAUCUCGAAUAGCGUUGUGACUGAGGUAACUGCGCAUCGAAUCUACUCAGCGGCGAGGCUAUUCAAGUAAGGUUAUUUUGGGCCA----GCGACU
((..((((.(((...((.(((((((.((((..(((((.......((...))......)))))..)))).))))))).))...))).))))..))...----...... ( -34.02)
>DroSec_CAF1 3773 103 + 1
CCUGAAAUUACCCAUCUCGAAUAGCGUUGUGACUGAGGUAACUGCGCAUCGAAUCUACUCAGCGGCGAGGCUAUUCCAGUAAGGUUGUUUUGGGCCA----GCGACU
((..((((.(((...((.(((((((.((((..(((((.......((...))......)))))..)))).))))))).))...))).))))..))...----...... ( -34.42)
>DroSim_CAF1 6328 103 + 1
CCUGAAAUUACCCAUCUCGAAUAGCGUUGUGACUGAGGUAACUGCGCAUCGAAUCUACUCAGCGGCGAGGCUAUUCAAGUAAGGUUGUUUUGGGCCA----GCGACU
((..((((.(((...((.(((((((.((((..(((((.......((...))......)))))..)))).))))))).))...))).))))..))...----...... ( -34.42)
>DroEre_CAF1 3491 103 + 1
CCUAAGAUUACCCAUCUCGAAUAGCGUUGUGACUGAGGUAACUGCGCAUCGAAUCUACUCAGCGGCAAGGCUAUUCCAGUAAGGUUAUUUUGGGCCA----GCGACU
((((((((.(((...((.(((((((.((((..(((((.......((...))......)))))..)))).))))))).))...))).))))))))...----...... ( -34.92)
>DroYak_CAF1 4239 103 + 1
CCUAAAAUUACCCAUCUCGAAUAGCGUUGUGACUGAGGUAACUGCGCAUCGUAUCUACUCAGCGGCGAAGCUAUUCCAGUAAGGUUAUUUUGGGCCA----GCGACU
((((((((.(((...((.(((((((.((((..(((((.....((((...))))....)))))..)))).))))))).))...))).))))))))...----...... ( -34.50)
>DroPer_CAF1 3756 105 + 1
ACUGAAACAACCCGUCUCGAAUAGCGUUGUGACUGA--UGACUGCAUUUGUAAUUUUCUCAGCGGCAGUGCUAUUCCAGUUGGGUUGUUUGCGGCCAAACAACAACU
.(((((((((((((.((.((((((((((((..((((--.((.(((....))).))...))))..)))))))))))).)).)))))))))).)))............. ( -37.90)
>consensus
CCUGAAAUUACCCAUCUCGAAUAGCGUUGUGACUGAGGUAACUGCGCAUCGAAUCUACUCAGCGGCGAGGCUAUUCCAGUAAGGUUAUUUUGGGCCA____GCGACU
((((((((.(((...((.(((((((.((((..(((((....................)))))..)))).))))))).))...))).))))))))............. (-31.67 = -31.28 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:46 2006