Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,954,381 – 3,954,565 |
Length | 184 |
Max. P | 0.599638 |
Location | 3,954,381 – 3,954,501 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.73 |
Mean single sequence MFE | -32.12 |
Consensus MFE | -20.07 |
Energy contribution | -19.72 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.30 |
Mean z-score | -1.44 |
Structure conservation index | 0.62 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3954381 120 - 20766785 UCAACUACAUAGACCACAUGGCUGGCAUCAUGGAGAUGAUCCCAGGACCCACGCCAUACCCCUUCGUGGGUAAUCUGUUCCAGUUCGGUCUCAAGCCAGCCGGUGAGUACUGACCAAAUA .........((((((((.((((((((......(((((((...(((((((((((...........)))))))..)))).......)).)))))..))))))))))).)).)))........ ( -37.50) >DroVir_CAF1 1609 112 - 1 UCAAUUAUAUUGAUCACAUGGCUGGCAUUAUGGAAAUGAUACCGGGCCCAACGCCAUACCCAUUUGUGGGUAAUAUCUUUCAGUUCGGUCUGAAGCCAGCCGGUAAGCACAA-------- (((((...)))))..((.(((((((((((((....)))))(((((((.....))).((((((....)))))).............)))).....))))))))))........-------- ( -36.00) >DroGri_CAF1 1425 118 - 1 UCAAUUACCUAGAUCACAUGGCUGGUAUUAUGGAAAUGAUACCGGGUCCAACGCCCUAUCCCUUUGUGGGUAACCUAUUUCAGUUUGGACUUAAGCCAGCCGGUAAGCACAA--UAAAUC ....(((((..(....).(((((((((((((....))))))))((((((((.((((...........))))...((.....)).)))))))).)))))...)))))......--...... ( -32.60) >DroWil_CAF1 1277 110 - 1 UCAACUAUUUGGAUCAUAUGGCUGGUAUAAUGGAAAUGAUACCAGGACCCACACCAUAUCCAUUUGUUGGUAAUCUCUUUCAGUUCGGUCUCAAGCCAGACGGUGAGUG----------A (((((....((((...((((((((((((.((....)).)))))))........)))))))))...)))))...((.(((...((..(((.....)))..))...))).)----------) ( -28.30) >DroMoj_CAF1 1804 118 - 1 UCAACUACAUAGAUCACAUGGCUGGCAUUAUGGAAAUGAUACCGGGACCCACGCCCUAUCCGUUCGUGGGCAAUAUCUUUCAGUUCGGCCUGAAGCCAGCCGGUAAGCCCAA--UAGAUA ............(((....((((((((((((....))))).....(.((((((..(.....)..))))))).......(((((......))))))))))))((....))...--..))). ( -34.90) >DroAna_CAF1 1164 113 - 1 UCAAUUAUAUUGAUCAUAUGGCGAGCAUUAUGGAAAUGAUACCAGGACCGACGCCAUAUCCAUUCGUUGGCAAUCUAUUUCAAUUUGGCCUUAAGCCCGCCGGUAAGUACUGG------- ........(((((..((((((((.......(((........))).......))))))))(((.....))).........)))))..(((.....)))..(((((....)))))------- ( -23.44) >consensus UCAACUACAUAGAUCACAUGGCUGGCAUUAUGGAAAUGAUACCAGGACCCACGCCAUAUCCAUUCGUGGGUAAUCUCUUUCAGUUCGGUCUCAAGCCAGCCGGUAAGCACAA_______A ..................(((((((((((((....))))).((.(......)((((...........))))...............))......)))))))).................. (-20.07 = -19.72 + -0.36)
Location | 3,954,461 – 3,954,565 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.51 |
Mean single sequence MFE | -28.48 |
Consensus MFE | -16.62 |
Energy contribution | -16.90 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.41 |
Mean z-score | -1.69 |
Structure conservation index | 0.58 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588161 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3954461 104 - 20766785 ----------------AUGUUUCUAAUAGCCAUUGCCAUUAUUUUGGCCACCAUUUUGGUGUUCAAGGGAGUGAGGAUAUUCAACUACAUAGACCACAUGGCUGGCAUCAUGGAGAUGAU ----------------..(((((((...((((..(((((..(((((..((((.....))))..)))))..(((.(..(((........)))..)))))))))))))....)))))))... ( -30.20) >DroVir_CAF1 1681 120 - 1 GAAAAAAGAAAACAGCAUGUUUCUGCUAGCAGCGGCAAUCGUUUUGGCCACAAUUUUGGUGUUCAAGGGUGUCAAGAUAUUCAAUUAUAUUGAUCACAUGGCUGGCAUUAUGGAAAUGAU ......(((((........)))))((((((...........(((((..(((.......)))..)))))(((((((.(((......))).)))).)))...))))))(((((....))))) ( -26.00) >DroGri_CAF1 1503 104 - 1 ----------------AUGUUUCUGUUAGCGGCGGCAAUAAUCUUGGCCACCAUUUUGGUGUUCAAGGGUGUCAGGAUAUUCAAUUACCUAGAUCACAUGGCUGGUAUUAUGGAAAUGAU ----------------..((((((((((.((((((((....(((((..((((.....))))..))))).))))(((.((......)))))..........)))).))..))))))))... ( -30.50) >DroWil_CAF1 1347 104 - 1 ----------------AUGUUUUUAUUAGCUGCUGCCAUUUUAUUGGCCACCAUUUUGGUGUUCAAGGGCGUGAAAAUCUUCAACUAUUUGGAUCAUAUGGCUGGUAUAAUGGAAAUGAU ----------------...................(((((.(((..((((((.....)))(((((((....((((....))))....))))))).....)))..))).)))))....... ( -25.80) >DroMoj_CAF1 1882 104 - 1 ----------------AUGUUUCUGCUAGUCUUUGGCAUUAUUUUGGCCACCAUUCUGGUGGUCAAGGGCGUGAGGAUAUUCAACUACAUAGAUCACAUGGCUGGCAUUAUGGAAAUGAU ----------------..(((((((((((((....((....(((((((((((.....)))))))))))))((((...(((........)))..))))..))))))).....))))))... ( -33.10) >DroAna_CAF1 1237 104 - 1 ----------------AUGUUUCUGAUAGCCAUAGCCAUUAUUUUGGCCACCAUUCUGGUGUUCAAGGGAGUGAAAAUAUUCAAUUAUAUUGAUCAUAUGGCGAGCAUUAUGGAAAUGAU ----------------..(((((((((.((....(((((..(((((..((((.....))))..)))))..((((.(((((......)))))..)))))))))..)))))..))))))... ( -25.30) >consensus ________________AUGUUUCUGAUAGCCGCUGCCAUUAUUUUGGCCACCAUUUUGGUGUUCAAGGGAGUGAAGAUAUUCAACUACAUAGAUCACAUGGCUGGCAUUAUGGAAAUGAU ..................((((((((((((((.........(((((..((((.....))))..)))))...((((....))))...............)))))))).....))))))... (-16.62 = -16.90 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:44 2006