Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,939,162 – 3,939,393 |
Length | 231 |
Max. P | 0.662897 |
Location | 3,939,162 – 3,939,282 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.29 |
Mean single sequence MFE | -34.83 |
Consensus MFE | -22.71 |
Energy contribution | -23.27 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.08 |
Mean z-score | -1.49 |
Structure conservation index | 0.65 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509893 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3939162 120 - 20766785 AAGUUGGCCAAACUCUCGCCUCAAGUGCCAGCUUCUGAGUGCACUGAAUGCCAUUGCAACAAGUUUGUUGUGAUGCCUAUGGACCACUCCUAUGGAGUGGUGCAGUUUUCUUAAGGGCAG .((((.....))))...((((..(((((..(((....))))))))(((.(((((..(((((....)))))..)))....((.((((((((...)))))))).)))).)))....)))).. ( -40.60) >DroSim_CAF1 872 110 - 1 AAGUUGGCCAAAGUGUCGCCUCAAGUGCCAGCUCCUGAGUGCACUGAAGGCCAUUGCAACAAGUUUGUUGUGAUGCCUAUGGAC----------GAAUGGAGCAGUUUCCUUUAAGGCAU ......(((....((((((((..(((((..(((....))))))))..))))(((..(((((....)))))..)))......)))----------)...((((....)))).....))).. ( -36.50) >DroYak_CAF1 783 100 - 1 AAGUUGGCCAAAGUGUAGCCUUAAGUAGCAGCUCUGGAGUGCAUUGAAGGCCAUUGCAACAAGUUUGUUGUGAUGCCUAUGGAC----------GAAUGGAACAGUUCAC---------- ..(((((((..((((((..((..(((....)))..))..))))))...))))((..(((((....)))))..)).......)))----------((((......))))..---------- ( -27.40) >consensus AAGUUGGCCAAAGUGUCGCCUCAAGUGCCAGCUCCUGAGUGCACUGAAGGCCAUUGCAACAAGUUUGUUGUGAUGCCUAUGGAC__________GAAUGGAGCAGUUUACUU_A_GGCA_ ..((...(((.......((((..(((((..(((....))))))))..))))(((..(((((....)))))..)))......................))).))................. (-22.71 = -23.27 + 0.56)
Location | 3,939,282 – 3,939,393 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.26 |
Mean single sequence MFE | -27.20 |
Consensus MFE | -18.79 |
Energy contribution | -19.13 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.13 |
Mean z-score | -1.60 |
Structure conservation index | 0.69 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662897 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3939282 111 + 20766785 CAAAAACUGCUCGUUCUGGGCAAUUAGUCAAGAAAAAGUUGACAACAAGCUUUACA--------GGCAACGCUAACAGGGAGA-AACUCUCUAAUUUUCCUUUUAAUCCUCCACGCAGAC ......((((.....((((((.....(((((.......))))).....(((.....--------)))...)))..)))((((.-....))))......................)))).. ( -21.20) >DroSim_CAF1 982 120 + 1 CAAAAACUGCUCGUUCUGGGCAAUUAGUCAAGAAAAAGUUGACAACAAGCUUUGCAGGCAUGCAGGCAACGCUAAGAGGGAGAAAACUCUCUAAUUUUCCCUUUAAUCCUCCACGCAGAC ......((((........(((.....(((((.......))))).....((((.(((....)))))))...))).((((((((((..........))))))))))..........)))).. ( -30.80) >DroYak_CAF1 883 99 + 1 CAGGAACUGCUCGUUCCAGGCAAUUAGUCGAGAAAAAGUUGACAAGUU---------------------GGCUGGGAGGGAGAAAACUCUCUAAUUUUCCUUUUAAUCCUUCACGCAGAC ......((((.....((((.(((((.(((((.......))))).))))---------------------).))))(((((((((((........))))).......))))))..)))).. ( -29.61) >consensus CAAAAACUGCUCGUUCUGGGCAAUUAGUCAAGAAAAAGUUGACAACAAGCUUU_CA________GGCAACGCUAAGAGGGAGAAAACUCUCUAAUUUUCCUUUUAAUCCUCCACGCAGAC ......((((........(((.....(((((.......))))).....................(....)))).((((((((((..........))))))))))..........)))).. (-18.79 = -19.13 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:40 2006