| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,932,902 – 3,932,997 |
| Length | 95 |
| Max. P | 0.960402 |
| Location | 3,932,902 – 3,932,997 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 78.45 |
| Mean single sequence MFE | -27.08 |
| Consensus MFE | -19.53 |
| Energy contribution | -19.98 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.960402 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3932902 95 + 20766785 AUCCA---ACUUGA--------AGUUAUCAAAAUGACGCAGGACAUGCUGCUGGGCAACGAGGAGCCGAGCAAGAGCAAGGAGACGUUCCUGGAGAAGUUCUGUGU ...((---..((((--------.....))))..))(((((((((.(((((((.(((........))).)))...))))(((((...)))))......))))))))) ( -29.80) >DroVir_CAF1 25519 101 + 1 G--CA---AAUUAAACGCAGACAGUAAUCAAAAUGGCUCAGGAUAUGCUGCUCGGCAAUGAAGAGCCCAGCAACAACAAGGAGACAUUUCUGCAGCAGUUCUGCCU .--..---........(((((((..........))((((((((..((.((((.(((........))).)))).))....(....)..))))).)))...))))).. ( -26.10) >DroSim_CAF1 46121 95 + 1 AACCA---AAGUGA--------AGCUAUCAAAAUGACGCAGGACAUGCUGCUGGGCAACGAGGAGCAGAGCAAGAGCAAGGAGACGUUCCUAGAGAAGUUCUGUGU ...((---...(((--------.....)))...))(((((((((.((((.((.(....).)).))))......((((..(....)))))........))))))))) ( -28.00) >DroYak_CAF1 16991 95 + 1 AAACA---AAUUGA--------AGCUCAAAAAAUGACGCAGGACAUGCUGCUGGGCAACGAGGAGCCGAGCAAGAGCAAGGAGACGUUUCUGGAGAAGUUCUGUGU .....---..(((.--------....)))......(((((((((.(((((((.(((........))).)))...)))).(....)............))))))))) ( -27.90) >DroAna_CAF1 16465 94 + 1 CUUCA---AAUUAA--------ACGUA-CAAAAUGACUCAGGACAUGCUGCUUGGUAACGAGGAACCGAGCAAAAGCAAGGAAACGUUCCUAGAGAAGUUUUGUCU .....---......--------..(.(-((((((..((((((((.(((((((((((........)))))))...)))).(....)).)))).)))..)))))))). ( -28.60) >DroPer_CAF1 19576 97 + 1 AACCAUAGAA-UUA--------AACAAUUAAAAUGACGCAAGACAUGCUUCUUGGAACCGAGGAACCGAGCAAGAGCAAGGAGACUUUCCUGGAGAAGUUCUGCGU ..........-...--------.............(((((..((.((((((((((..(....)..)))))...)))))(((((...)))))......))..))))) ( -22.10) >consensus AACCA___AAUUGA________AGCUAUCAAAAUGACGCAGGACAUGCUGCUGGGCAACGAGGAGCCGAGCAAGAGCAAGGAGACGUUCCUGGAGAAGUUCUGUGU ...................................(((((((((.(((((((.(((........))).)))...))))(((((...)))))......))))))))) (-19.53 = -19.98 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:37 2006