| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,931,986 – 3,932,086 |
| Length | 100 |
| Max. P | 0.871952 |
| Location | 3,931,986 – 3,932,086 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 73.60 |
| Mean single sequence MFE | -20.65 |
| Consensus MFE | -8.45 |
| Energy contribution | -8.73 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.871952 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3931986 100 + 20766785 GCAUCUCAUACAGGGAAUGGCGGUCCCAAUCACG------------CUCACUCCCACUUCCAUGCCGAAGUCAACCCCCCAGACACAAUAAAGGGUUUUCAACUUUGACCCU ...(((......((((.(((((..........))------------).)).))))(((((......))))).........)))........((((((.........)))))) ( -22.00) >DroPse_CAF1 17630 75 + 1 AAAUCCCAUAUAGAAAAG-----------------------------------CCGCUUCCCCGCAU--CCCCUCCUGGGAGACAAAAUAAAGGGUUUUCAACUUUAACCCU ............(((((.-----------------------------------((((......)).(--((((....))).)).........)).)))))............ ( -15.20) >DroSec_CAF1 15700 100 + 1 GCAUCUCAUACAGGGAAUGGCGGUCCCAAUCACG------------CCCACUCCCACUUCCAUGCCAAAGUCAACCCCCCAGACACAAUAAAGGGUUUUCAACUUUGACCCU ((((........((((..((((..........))------------))...))))......))))((((((.(((((...............)))))....))))))..... ( -22.50) >DroSim_CAF1 42637 99 + 1 GCAUCUCAUGUAGGGAAUGGCAGUCCCAAUCACG------------CCCACUCCCACUUCCAUGCCAAAAUCAACC-CCCAGAAACAAUAAAGGGUUUUCAACUUUGACCCU ((((.....((.((((.(((..((.......)).------------.))).))))))....))))...........-..............((((((.........)))))) ( -19.40) >DroEre_CAF1 15090 100 + 1 GCAUCCCAUAUAGCGGAUGGUGGACCCACUCACG------------CCCACGCCCACCCCCGCCCCAAAGUCAACCCCCCAGACACAAUAAAGGGUUUUCAACUUUGACCCU ............((((..(((((...........------------.......))))).))))..((((((.(((((...............)))))....))))))..... ( -21.83) >DroYak_CAF1 16104 109 + 1 GCAUCCCAUAUAGGGGAUGGU---CCCACUCACGGCCACUCCCACUCCCACGCCCACGCCCACGCCAAAGCUAACCCCCCAGACACAAUAAAGGGUUUUCAACUUUGACCCU ((..........(((..((((---(........)))))..)))........((....))....))(((((..(((((...............))))).....)))))..... ( -22.96) >consensus GCAUCCCAUAUAGGGAAUGGCGGUCCCAAUCACG____________CCCACUCCCACUUCCACGCCAAAGUCAACCCCCCAGACACAAUAAAGGGUUUUCAACUUUGACCCU ............((((.(((.................................))).))))..............................((((((.........)))))) ( -8.45 = -8.73 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:36 2006