| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,927,176 – 3,927,267 |
| Length | 91 |
| Max. P | 0.538062 |
| Location | 3,927,176 – 3,927,267 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 75.79 |
| Mean single sequence MFE | -26.20 |
| Consensus MFE | -10.85 |
| Energy contribution | -12.61 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.538062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3927176 91 + 20766785 CACAGUCCCGAAU----AAAGGAAUCCAGGGGC----UUAAGCUGACAAAG----GCUCGCGAACAGCAGUCGCUGGCACUGAAAUUGUCCGGCAGCUUAAAA ....(((((....----...........)))))----(((((((......(----(((.((.....))))))(((((.((.......)))))))))))))).. ( -29.66) >DroSec_CAF1 11552 91 + 1 CACAGUCCUGAAU----AAAGGAAUCCAGGGGC----UUAGGCUGACAAAG----GCUCGCGAACAGCAGUCGCUGGCACUGAAAAUGUCCGACAGCUUAAAA ....(((((....----...........)))))----((((((((.....(----(((.((.....))))))..(((.((.......))))).)))))))).. ( -22.86) >DroSim_CAF1 36909 91 + 1 CACAGUCCUGAAU----AAAGGAAUCCAGGGGC----UUAGGCUGACAAAG----GCUCGCGAACAGCAGUCGCUGGCACUGAAAUUGUCCGGCAGCUUAAAA ....(((((....----...........)))))----(((((((......(----(((.((.....))))))(((((.((.......)))))))))))))).. ( -26.76) >DroEre_CAF1 11136 91 + 1 CAGCGUCCUGAAU----AAAGGAAUCCAGGGGC----UUAAGCUGACAAAA----GCUACCGAACAGCAGUCGUCGGCACCGAAAUUGUCCGGAAGCUUAAAA ((((.((((....----..)))).((....)).----....))))....((----(((.(((....(((((..(((....))).))))).))).))))).... ( -24.60) >DroYak_CAF1 11690 91 + 1 CAGAGCCCUGAAU----AAAGGAAUUCAGGGAC----UUAAGCUCACAAAG----GCUCGCGAACAGCAGUCGUUGGGAGUGAAAUUGUUCGUCAGCUUAAAA ..(((((((((((----......)))))))).)----))..........((----(((.(((((((.((.((.....)).))....))))))).))))).... ( -31.30) >DroAna_CAF1 11420 100 + 1 AUGGUCGGUGAAUGGCCAAAGGAUCUCCGAAAUAACAAGAAGCAUCCAAAGAGAAUAUCUCGAAC---AAUCACUGACAUUAAAAUGCCCCAAGAGCUUAAAA ...((((((((.((..(...((((((.(..........).)).))))...(((.....))))..)---).))))))))......................... ( -22.00) >consensus CACAGUCCUGAAU____AAAGGAAUCCAGGGGC____UUAAGCUGACAAAG____GCUCGCGAACAGCAGUCGCUGGCACUGAAAUUGUCCGGCAGCUUAAAA .....(((((................)))))......((((((((..........(((.((((.......)))).))).(((........))))))))))).. (-10.85 = -12.61 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:35 2006