Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,908,632 – 3,908,733 |
Length | 101 |
Max. P | 0.857244 |
Location | 3,908,632 – 3,908,733 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 78.11 |
Mean single sequence MFE | -23.82 |
Consensus MFE | -15.91 |
Energy contribution | -16.50 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.20 |
Mean z-score | -1.65 |
Structure conservation index | 0.67 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857244 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3908632 101 + 20766785 CUAUAAGCGGCAAUCAGAUGGUUCGGAAACAGAAUGCCAUAAAAAGCUGUAAAUA-CCAAAGCUUAAUACCC----AAUCUUGGUGACAAACCUGAACCCGAGCUU- .......(((...((((((((((((....).))..)))))...(((((.......-....))))).......----....(((....)))..))))..))).....- ( -20.60) >DroSec_CAF1 247 101 + 1 CUAUAAGCGGCAAUCAGAUGGUUCGGAAACAGAAUGCCAUAAAAAGCUGCAAAUA-GCUUAGUUUAAUACCC----AAUCUUGGCGACAAGCCUUAGUCCGAGCUU- ......(((((......((((((((....).))..))))).....)))))....(-(((..(.((((.....----......(((.....))))))).)..)))).- ( -23.30) >DroSim_CAF1 247 101 + 1 CUAUAAGCGGCAAUCAGAUGGUUCGGAAACAGAAUGCCAUAAAAAGCUGCAAAUA-GCAAAGUUUAAUACCC----AAUCUUGGCGACAAGCCUUAGUCCGAGCUU- ((((..(((((......((((((((....).))..))))).....)))))..)))-)..((((((...((..----...((((....)))).....))..))))))- ( -23.10) >DroEre_CAF1 247 100 + 1 CUAUAAGCGGCAAUCAGGUGGUUCGGAAACAGGAUGCCAUAAAAAGCUGCAAGUA-CCAAAGCUUAAUACCG----AGUCUUGGCUACAAGCUCCAG-CCGAGCUU- ......(((((......((((((((....)..)).))))).....)))))..(((-((((..(((......)----))..)))).)))((((((...-..))))))- ( -30.60) >DroYak_CAF1 246 93 + 1 CUAUAAGCGGCAAUCAGAUGGUUCGGAAACAGGAUGCCAUAAAAAGCUGCAAAUA-ACAAAGUUUUAUACCGACAGAAUCUUGGCAACAAG------------CUU- ......(((((......((((((((....)..)).))))).....))))).....-.......................((((....))))------------...- ( -19.60) >DroMoj_CAF1 848 94 + 1 CUAUACGCGGCAAUCAGAUGGUUGGGAAACAGAAUGCCAUAAAAAGCUGCAAUAUAGCG-AGUA-AGUACUGAGCAACAGCUGAGCUUAA-----------AGCUUU ......(((((......(((((..(....).....))))).....))))).....(((.-..((-((..((.(((....))).)))))).-----------.))).. ( -25.70) >consensus CUAUAAGCGGCAAUCAGAUGGUUCGGAAACAGAAUGCCAUAAAAAGCUGCAAAUA_GCAAAGUUUAAUACCC____AAUCUUGGCGACAAGCCU_AG_CCGAGCUU_ ......(((((......(((((..(....).....))))).....))))).............................((((....))))................ (-15.91 = -16.50 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:32 2006