Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,903,960 – 3,904,053 |
Length | 93 |
Max. P | 0.630309 |
Location | 3,903,960 – 3,904,053 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 90.13 |
Mean single sequence MFE | -26.75 |
Consensus MFE | -21.57 |
Energy contribution | -21.60 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -2.20 |
Structure conservation index | 0.81 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630309 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3903960 93 + 20766785 --------CGCACAAAGGCG-GGGCGAAAAUCAACUUUUUGGCCAACAUUAAUUAACGAAAUUUUCGUCGAAAGCCAACUUUGC--------------UGGCAGUGCCAAAAGCCC --------(((......)))-(((((.....)....((((((((........(..((((.....))))..)..((((.......--------------)))).).))))))))))) ( -25.80) >DroSec_CAF1 9514 93 + 1 --------CGCACAAUGGCG-GGGCGAAAAUCAACUUUUUGGCCAACAUUAAUUAACGAAAUUUUCGUCGAAAGCCAACUUUGC--------------UGGCAGUGCCAAAAGCCC --------(((......)))-(((((.....)....((((((((........(..((((.....))))..)..((((.......--------------)))).).))))))))))) ( -25.80) >DroSim_CAF1 13988 93 + 1 --------CGCACAAAGGCG-GGGCGAAAAUCAACUUUUUGGCCAACAUUAAUUAACGAAAUUUUCGUCGAAAGCCAACUUUGC--------------UGGCAGUGCCAAAAGCCC --------(((......)))-(((((.....)....((((((((........(..((((.....))))..)..((((.......--------------)))).).))))))))))) ( -25.80) >DroEre_CAF1 9287 93 + 1 --------CGCACAAAGGCG-GGGCGAAAAUCAACUUUUUGGCCAACAUUAAUUAACGAAAUUUUCGUCGAAAGCCAACUUUGC--------------UGGCAAUGCCAAAAGCCC --------(((......)))-(((((.....)....(((((((.........(..((((.....))))..)..((((.......--------------))))...))))))))))) ( -25.20) >DroYak_CAF1 9650 93 + 1 --------CGCACAAAGGCG-GGGCGAAAAUCAACUUUUUGGCCAACAUUAAUUAACGAAAUUUUCGUCGAAAGCCAACUUUGC--------------UGGCAAUGCCAAAAGCCC --------(((......)))-(((((.....)....(((((((.........(..((((.....))))..)..((((.......--------------))))...))))))))))) ( -25.20) >DroAna_CAF1 9559 116 + 1 UGUUCAUAUGCCCAAAGGCGAGGGCGAAAAUCAACUUUUUGGCCAACAUUAAUUAACGAAAUUUUCGUCGAAAGCCAACUUUCCGGCUGCCUCGUUUUUGGCAAUGCCAAAAGCCG .........(((....)))((((((.((((......)))).)))........(..((((.....))))..).((((........))))..)))(((((((((...))))))))).. ( -32.70) >consensus ________CGCACAAAGGCG_GGGCGAAAAUCAACUUUUUGGCCAACAUUAAUUAACGAAAUUUUCGUCGAAAGCCAACUUUGC______________UGGCAAUGCCAAAAGCCC ........(((......))).(((((.....)....(((((((.........(..((((.....))))..)..((((.....................))))...))))))))))) (-21.57 = -21.60 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:31 2006