Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,899,036 – 3,899,137 |
Length | 101 |
Max. P | 0.553138 |
Location | 3,899,036 – 3,899,137 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 80.12 |
Mean single sequence MFE | -28.12 |
Consensus MFE | -16.15 |
Energy contribution | -15.77 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.17 |
Mean z-score | -1.75 |
Structure conservation index | 0.57 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3899036 101 - 20766785 CACAUUUAUUGUUUGGCAUUUUGAUCUGC---CAUUGCGGAUGAGCUGGCCAAUUUAUGCAAAUUUAAUUGGUUGCAAUUGUUGCGAUUCCAGCAG-CCACA-AAU- ........((((..(((....(.((((((---....)))))).)(((((((((((...........))))))(((((.....)))))..))))).)-)))))-)..- ( -28.20) >DroPse_CAF1 4923 101 - 1 CACAUUUAUUGUUUGGCAUUCUGAUCCCC-U-CCACGGGGAUGAGCUGGGCAAUUUAUGCAAAUUUAAUUGGUUGCAACUGCUC-GCUCCAAGG--GAAUUAUCAA- ..(((..((((((..((....(.((((((-.-....)))))).)))..))))))..)))..(((((..((((..((........-)).))))..--))))).....- ( -31.10) >DroEre_CAF1 4530 102 - 1 CACAUUUAUUGUUUGGCAUUUUGAUCUGC---CAGUGCGGAUGAGCUGGCCAAUUUAUGCAAAUUUAAUUGCUUGCAAUUGUUGCGAUUCGAGCAGGCCGCA-AUA- ..((((..(...((((((........)))---))).)..)))).((.(((((((((....)))))....((((((.(((((...))))))))))))))))).-...- ( -27.90) >DroYak_CAF1 4605 103 - 1 CACAUUUAUUGUUUGGCAUUUUGAUCUGC---CAGUGCGGAUGAGCUGGCCAAUUUAUGCAAAUUUAAUUGGUUGCAAUUGUUGCGAUUCGAGCAGGCCCCA-UUGC ........(((((((((((...(((..((---((((........))))))..))).))))..........(((((((.....))))))))))))))......-.... ( -25.50) >DroAna_CAF1 5217 97 - 1 CACAUUUAUUGUUUGGCAUUUUGAUCUGGGUACAG-GCGGAUGAGCUGGCCAAUUUAUGCAAAUUUAAUUGGUUGCAAUUGUUU--------GCCGGCUCCGUAAU- ...............((..((((.((((....)))-))))).((((((((.(((...(((((..........)))))...))).--------)))))))).))...- ( -24.90) >DroPer_CAF1 4886 101 - 1 CACAUUUAUUGUUUGGCAUUCUGAUCCCC-U-CCACGGGGAUGAGCUGGGCAAUUUAUGCAAAUUUAAUUGGUUGCAACUGCUC-GCUCCAAGG--GAAUUAUCAA- ..(((..((((((..((....(.((((((-.-....)))))).)))..))))))..)))..(((((..((((..((........-)).))))..--))))).....- ( -31.10) >consensus CACAUUUAUUGUUUGGCAUUUUGAUCUGC___CAGUGCGGAUGAGCUGGCCAAUUUAUGCAAAUUUAAUUGGUUGCAAUUGUUG_GAUUCAAGCAGGCCCCA_AAA_ ............(((((...((.((((((.......)))))).))...)))))....(((((..........))))).............................. (-16.15 = -15.77 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:29 2006