Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,336,169 – 1,336,289 |
Length | 120 |
Max. P | 0.998453 |
Location | 1,336,169 – 1,336,289 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.17 |
Mean single sequence MFE | -40.28 |
Consensus MFE | -37.64 |
Energy contribution | -37.48 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.12 |
Mean z-score | -2.05 |
Structure conservation index | 0.93 |
SVM decision value | 3.11 |
SVM RNA-class probability | 0.998453 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1336169 120 + 20766785 CCGCCCCAACUAAAUCAACCUGAGCUGCUCCCGUUGGCUGCUGGCCACCUGUCAGGUGCAUGUAGAUAAAUUUCCCAUCUAAUGGGGCCAGUCGCCCAAGGCAACGCAGAGCAGCCUCUU .....................(((((((((.(((((.((((((((((((.....))))...............(((((...)))))))))))......)).)))))..)))))).))).. ( -40.60) >DroSec_CAF1 54691 120 + 1 CCGCCCCAACUAAAUCAACCUGAGCUGCUCCCGUUGGCCACUGGCCACCUGUCAGGUGCAUGUAGAUAAAUUUCCCAGCUAAUGGGGCCAGUCGCCCAAGGCAACGCAGAGCAGCCUCUU .....................(((((((((.(((((((.((((((((((.....))))...............((((.....)))))))))).)))......))))..)))))).))).. ( -40.70) >DroSim_CAF1 32881 120 + 1 CCGCCCCAACUAAAUCAACCUGAGCUGCUCCCGUUGGCCACUGGCCACCUGUCAGGUGCAUGUAGAUAAAUUUCCCAGCUAAUGGGGCCAGUCGCCCAAGGCAACGCAGAGCAGCCUCUU .....................(((((((((.(((((((.((((((((((.....))))...............((((.....)))))))))).)))......))))..)))))).))).. ( -40.70) >DroEre_CAF1 36174 120 + 1 CCGUCCCAACUAAAUCAACCUGAGCUGCUCCCGUUGGCUGCUGGCCACCUGUCAGGUGCAUGUAGAUAAAUUUCCCAGCUAAUGGGGCCAGUCGCCCAAGGCAACGGACAGCAGCCUCUU .....................((((((((.((((((.(((((((.((((.....))))......((......))))))).....((((.....)))).)).))))))..))))).))).. ( -41.70) >DroYak_CAF1 23353 120 + 1 CCGUCCCAACUAAAUCAACCUAAGCUGCUCCCGUUGGCUACUGGCUACCUGUCAGGUGCAUGUAGAUAAAUUUCCUAGCUAAUGGGGCCAGUCGCCCAAGGCAACGGACAGCAGCCUCUU ..((((.................((((..((((((((((((((((.....))))).........((......)).)))))))))))..)))).(((...)))...))))........... ( -37.70) >consensus CCGCCCCAACUAAAUCAACCUGAGCUGCUCCCGUUGGCUACUGGCCACCUGUCAGGUGCAUGUAGAUAAAUUUCCCAGCUAAUGGGGCCAGUCGCCCAAGGCAACGCAGAGCAGCCUCUU .......................(((((((.....(((.((((((((((.....))))...............((((.....)))))))))).)))...(....)...)))))))..... (-37.64 = -37.48 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:17 2006