| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,896,705 – 3,896,796 |
| Length | 91 |
| Max. P | 0.739944 |
| Location | 3,896,705 – 3,896,796 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 74.46 |
| Mean single sequence MFE | -28.14 |
| Consensus MFE | -12.71 |
| Energy contribution | -12.30 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.739944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3896705 91 - 20766785 CCAAAAAGUAGCCGGC-AAAAAGAAAGCGAAAACGAGGAGCAAGUCGAC------------------------GUAGUCGAACGGUUGCGUUGCUUGUUUGCUUUAAUUGCAAAUG ..............((-((....((((((....)...(((((((.((((------------------------(((..(....)..)))))))))))))))))))..))))..... ( -25.70) >DroVir_CAF1 15898 81 - 1 CCAAAAAGUAGCCAGC-AAAAAUAAAAAGAAAAC---------------------------AGCGGCU-----GCAGC--AUCGACUGCGUUGCUUGUUUGCUUUAAUUGCAAAUG .......((((((.((-.................---------------------------.))))))-----))(((--(.((....)).)))).((((((.......)))))). ( -20.37) >DroPse_CAF1 2304 115 - 1 CCAAAAAGUAGCCGGC-AAAAAGAAAGCGAAAACGACAACGACGACGGCGUCGGCCUCGGCAUCGGCAUCGGCAUCGGCGAACGGUUGUGCUGCUUGUUUGCUUUAAUUGCAAAUG .....(((((((((((-..........(((...(((...(((((....)))))((....)).)))...)))((....)).....)))).)))))))((((((.......)))))). ( -34.10) >DroYak_CAF1 2187 91 - 1 CCAAAAAGUAGCCGGC-AAAAAGAAAGCGAAAACGAGGAGCAAGUCGAC------------------------GUAGCCGAACGGUUGCGUUGCUUGUUUGCUUUAAUUGCAAAUG ..............((-((....((((((....)...(((((((.((((------------------------((((((....))))))))))))))))))))))..))))..... ( -30.00) >DroAna_CAF1 2915 92 - 1 CCAAAAAGUAGCCGGCCAAAAAGAAAGCGAAAACGCGGAGCAAGUCGAC------------------------GUCGCCGAACGGCUGCGUUGCUUGUUUGCUUUAAUUGCAAAUG .......((((..(((..........(((....))).(((((((.((((------------------------((.(((....))).))))))))))))))))....))))..... ( -28.00) >DroPer_CAF1 2275 103 - 1 CCAAAAAGUAGCCGGC-AAAAAGAAAGCGAAAACGACAACGACGACGGCGUCGGCAUCGGC------------AUCGGCGAACGGUUGCGCUGCUUGUUUGCUUUAAUUGCAAAUG .....(((((((..((-((...(...((((...(((...(((((....)))))...)))..------------.)).))...)..)))))))))))((((((.......)))))). ( -30.70) >consensus CCAAAAAGUAGCCGGC_AAAAAGAAAGCGAAAACGAGGAGCAAGUCGAC________________________GUAGCCGAACGGUUGCGUUGCUUGUUUGCUUUAAUUGCAAAUG .....(((((((((((....................................................................)))).)))))))((((((.......)))))). (-12.71 = -12.30 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:28 2006