Locus 828

Sequence ID 2R_DroMel_CAF1
Location 3,895,109 – 3,895,201
Length 92
Max. P 0.600102
window1448

overview

Window 8

Location 3,895,109 – 3,895,201
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 79.12
Mean single sequence MFE -30.68
Consensus MFE -21.04
Energy contribution -21.60
Covariance contribution 0.56
Combinations/Pair 1.24
Mean z-score -1.22
Structure conservation index 0.69
SVM decision value 0.13
SVM RNA-class probability 0.600102
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3895109 92 + 20766785
GGAUGAGUGGUCCCCGGAGUCCUGGACAAUGCUUGGCCUUCAUUGUUGUCAAGCGGAGAGCCACCACCACCCACGAGCCACCCACUAGCCAC
((.((.((((..(..((.((..(((.....(((((((..........)))))))((....)).)))..))))..)..)))).))....)).. ( -26.10)
>DroSec_CAF1 602 92 + 1
GGGUGAGUGGUCCCCGGAGUCCUGGACAAUGCUUGGCCUUCAUUGUUGUCAAGCGGAGAGCCACCACCACCCACGAGCCACCCACUAGCCAC
(((((.(((((..((((....)))).........(((((((.(((....)))..)))).))))))))))))).................... ( -31.60)
>DroSim_CAF1 610 81 + 1
GGGUGAGUGGUCCCCGGAGUCCUGGACAAUGCUUGGCCUUCAUUGUUGUCAAGCGGAGAGCCACCACCAC-----------CCACUAGCCAC
(((((.(((((..((((....)))).........(((((((.(((....)))..)))).)))))))))))-----------))......... ( -31.60)
>DroEre_CAF1 586 73 + 1
GGGUGAGUGGUCCCCGGAGUCCUGGACAAUGCUUGGCCUUCAUUGUUGUCAAGCAGACGGCCACCACCACCCA-------------------
(((((.(((((..(((..(((...)))..((((((((..........))))))))..)))..)))))))))).------------------- ( -33.20)
>DroYak_CAF1 586 92 + 1
GGGUGAGUGGUCCCCGGAGUCGUGGACAAUGCUUGGCCUUCAUUGUUGUCAAGCAGAGAGCCACCACCACCCACGAGCCGCCCACCAGCCAC
.((((.((((..(..((.((.((((....((((((((..........)))))))).....)))).))..))...)..)))).))))...... ( -33.30)
>DroPer_CAF1 726 81 + 1
GAGAGAAGAGGCCUGGGAGUCCUGGACAAUGCUUGGCCUUCAUUGUUGUCAAGCAGCGGCUCGCU---------GGGCCACCCAC--ACCAC
.........((((..(((((((((((((((...((.....))..))))))...))).))))).).---------.))))......--..... ( -28.30)
>consensus
GGGUGAGUGGUCCCCGGAGUCCUGGACAAUGCUUGGCCUUCAUUGUUGUCAAGCAGAGAGCCACCACCACCCA_GAGCCACCCACUAGCCAC
.((((.(((((..((((....))))....((((((((..........))))))))....)))))))))........................ (-21.04 = -21.60 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:27 2006