Locus 827

Sequence ID 2R_DroMel_CAF1
Location 3,882,861 – 3,882,962
Length 101
Max. P 0.551152
window1447

overview

Window 7

Location 3,882,861 – 3,882,962
Length 101
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 83.04
Mean single sequence MFE -23.20
Consensus MFE -16.54
Energy contribution -16.82
Covariance contribution 0.28
Combinations/Pair 1.05
Mean z-score -1.59
Structure conservation index 0.71
SVM decision value 0.03
SVM RNA-class probability 0.551152
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3882861 101 - 20766785
GACCAAACUACAA-AUUUGUAACCGAAUACACAAUCAGCUCAACGGAGCCGAUGUGAAUUUUGGAAGAGGCCGAGAGGAACUGGCAUA--C----AAAGUUAUUCGAC
........((((.-...))))..(((((.((((.((.((((....)))).))))))(((((((......((((........))))...--)----))))))))))).. ( -24.40)
>DroSec_CAF1 6239 101 - 1
AACCAAACUACAA-AUUUUUAACCGAAUACACAAUCAGCUCAACGGAGCCGAUGUGAAUUUUGGAAGAGGCCGAGAGGUACUGGCAUA--A----AAACUUAUUCGAC
..(((........-........(((((..((((.((.((((....)))).))))))...))))).....(((....)))..)))....--.----............. ( -22.70)
>DroAna_CAF1 6144 104 - 1
UUCCUAACUA-AA-AUAAUAAACCGAAAA-ACAUUCAGCUCA-UGGAGCCGAUGUUUAAUUUAGAAGAAGUCGAGACAAACUGAGCUCUACGGGGAACAUCAUCUGGU
..........-..-.......((((....-.......((((.-..)))).(((((((..(.((((.(.(((........)))...))))).)..)))))))...)))) ( -17.30)
>DroEre_CAF1 7279 102 - 1
GACCAAACUACAAAAUUUUAAACCGAAAACACAAUCAGCUCAACGGAGCCGAUGUGAAUUUUGGAAGAGGCCGAGAGGAACUGGCCUA--C----AAACUUAUUCGAC
.......................((((..((((.((.((((....)))).))))))...((((....((((((........)))))).--)----)))....)))).. ( -24.80)
>DroYak_CAF1 6927 101 - 1
GACCAAACUACAA-AUUUUAAACCGAAUACACAAUCAGCUCAACGGAGCCGAUGUGAAUUUUGGAAGAGGCCGAGAGGAACUGGCCUA--C----AAACUUAUUCGAC
.............-.........((((((((((.((.((((....)))).))))))...((((....((((((........)))))).--)----)))..)))))).. ( -26.80)
>consensus
GACCAAACUACAA_AUUUUAAACCGAAUACACAAUCAGCUCAACGGAGCCGAUGUGAAUUUUGGAAGAGGCCGAGAGGAACUGGCCUA__C____AAACUUAUUCGAC
......................(((((..((((.((.((((....)))).))))))...))))).....((((........))))....................... (-16.54 = -16.82 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:26 2006