Locus 825

Sequence ID 2R_DroMel_CAF1
Location 3,877,056 – 3,877,166
Length 110
Max. P 0.644635
window1442

overview

Window 2

Location 3,877,056 – 3,877,166
Length 110
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 91.67
Mean single sequence MFE -37.80
Consensus MFE -30.69
Energy contribution -32.25
Covariance contribution 1.56
Combinations/Pair 1.03
Mean z-score -1.63
Structure conservation index 0.81
SVM decision value 0.23
SVM RNA-class probability 0.644635
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3877056 110 + 20766785
ACCUGGGAAUCUGUGCUCGGCGCAGGCGCAGCUUCGAGGUGAUCAUGGUGCCUGCCUUUUUUGAAUAUCUAAUUUAGAGAGGCGUUAGCCGAAAGGGUGAAGUUCGAAAU
...((((.((((....(((((((((((((....((.....)).....))))))))(((((((((((.....))))))))))).....)))))..))))....)))).... ( -33.60)
>DroSec_CAF1 693 110 + 1
ACCUGGGAAUCUGUGCUCGACGCAGGCGCAGCUUCGAUGUAAUCAUGGUGCCUGGCUUUUUUGAAUAUCAAAUUUAGAGAGGCGUUGGCCGAAAGGGUGCGGUUCGAAAU
......(((.(((..((((((.(((((((......(((...)))...)))))))((((((((((((.....)))))))))))))))))((....)))..))))))..... ( -38.30)
>DroEre_CAF1 693 110 + 1
UCCUUGGAAUCUGUGCUCGGCGCAGGCGCAGCUUCGAGCUGAGCAUGGUGCCUGGCUUUUUUGAAUAUCAAAUUUAGAGAGGCGCUUGCCGAAAAGGUGCGGUUCGAAAU
...((.(((.(((..((((((.(((((((.((((......))))...)))))))((((((((((((.....))))))))))))....)))))....)..)))))).)).. ( -43.80)
>DroYak_CAF1 644 108 + 1
ACCUUGGAAUCUGUGCUCGGCGCAGGCGCAGCUUCGAGGUGAUCAUGGUGCCUGGCUU-UUUGAAUAUCAAAUUUAGAGAGGCGUUUGCCGAAAAGGUGCG-CUCGAAAU
((((((((..(((((((.......))))))).))))))))..((..(((((..(.(((-(((((((.....)))))))))).)....(((.....))))))-)).))... ( -35.50)
>consensus
ACCUGGGAAUCUGUGCUCGGCGCAGGCGCAGCUUCGAGGUGAUCAUGGUGCCUGGCUUUUUUGAAUAUCAAAUUUAGAGAGGCGUUUGCCGAAAAGGUGCGGUUCGAAAU
......(((.(((((((((((.(((((((....((.....)).....)))))))((((((((((((.....))))))))))))....)))))....)))))))))..... (-30.69 = -32.25 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:21 2006