Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,870,792 – 3,870,911 |
Length | 119 |
Max. P | 0.876667 |
Location | 3,870,792 – 3,870,911 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 92.86 |
Mean single sequence MFE | -57.15 |
Consensus MFE | -47.41 |
Energy contribution | -47.48 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.05 |
Mean z-score | -2.12 |
Structure conservation index | 0.83 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.876667 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3870792 119 - 20766785 ACAUGGUCCUGUGGCUGUGGCACUGAGCGUUGUCCGCUCGCGCCGCUCGGCCACCCGACGGGCGGGGCUCAGAGCCUCCAGCUUGUCGUAGGCGCAGAUUAUCUUCUUGCGGAUCAUGA .((((((((.(((((((((((.(.(((((.....)))))).)))))..)))))).(((((((((((((.....))).)).))))))))...(((.(((......)))))))))))))). ( -61.60) >DroSec_CAF1 126549 119 - 1 ACAGGGUCCUGUGGCUGCGGCGCUGAGCGUUGUCCGCUCGCGCCUCUUGGCCACCCGACGGGCGGGGCUCAGAGCCUCCAGCUUGUCGUAGGCGCAGAUUAUCUUCUUGCGGAUCAUGA .((.(((((.(((((((.(((((.(((((.....)))))))))).)..)))))).(((((((((((((.....))).)).))))))))...(((.(((......))))))))))).)). ( -58.80) >DroEre_CAF1 127571 119 - 1 ACAGGGUCCUGUGGCUGUGGGGCUUAACGUUGUCCGCUCACGCCGCUUGGCCACCCGACGGGCGGGGCUCAGGGCCUCCAGCUUGUCGUAGGCGCAGAUGAUCUUCUUGCGGAUCAUGA .((.(((((.(((((((.(((((........)))).).)).)))))...(((...(((((((((((((.....))).)).))))))))..)))(((((......)).)))))))).)). ( -52.10) >DroYak_CAF1 124924 119 - 1 ACAGGGUCCUGUGCCUGCGGGGCCUGACGUUGUCCGCUCACGCCGCUUGGCCACCCGACGGGCGGGGCUGAGAGCCUCCAGCUUGUCGUAGGCGCAGAUGAUCUUCUUGCGGAUCAUGA ........((((((((((((((((...((.(((......))).))...)))).)).((((((((((((.....))).)).)))))))))))))))))(((((((......))))))).. ( -56.10) >consensus ACAGGGUCCUGUGGCUGCGGCGCUGAACGUUGUCCGCUCACGCCGCUUGGCCACCCGACGGGCGGGGCUCAGAGCCUCCAGCUUGUCGUAGGCGCAGAUGAUCUUCUUGCGGAUCAUGA .((.(((((.(((((.((((.((........))))))....)))))...(((...(((((((((((((.....))).)).))))))))..)))(((((......)).)))))))).)). (-47.41 = -47.48 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:16 2006