Locus 820

Sequence ID 2R_DroMel_CAF1
Location 3,868,006 – 3,868,102
Length 96
Max. P 0.839347
window1433

overview

Window 3

Location 3,868,006 – 3,868,102
Length 96
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 95.96
Mean single sequence MFE -25.80
Consensus MFE -25.50
Energy contribution -25.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.99
SVM decision value 0.74
SVM RNA-class probability 0.839347
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3868006 96 - 20766785
AAAUA------CACGCAGCAUUAGCCACAACUAACAUGACAUGCGCCAAAUUAUGCUGCCAAUUUCGCAGGUGGGGAGCGUAAGUCAUGCAAAGCGAACAGC
.....------..(((.((....)).........((((((.((((((...((((.((((.......)))))))).).))))).))))))....)))...... ( -25.50)
>DroSec_CAF1 123774 96 - 1
AAAAA------CACGCAGCAUUAGCCACAACUAACAUGACAUGCGCCAAAUUAUGCUGCCAAUUUCGCAGGUGGGGAGCGUAAGUCAUGCAAAGCGAACAGC
.....------..(((.((....)).........((((((.((((((...((((.((((.......)))))))).).))))).))))))....)))...... ( -25.50)
>DroEre_CAF1 124728 102 - 1
AAAUACUCGCACACGCAGCAUUAGCCACAACUAACAUGACAUGCGCCAAAUUAUGCUGCCAAUUUCGCAGGUGGGGAGCGUAAGUCAUGCAAAGCGAACUGC
......((((.......((....)).........((((((.((((((...((((.((((.......)))))))).).))))).))))))....))))..... ( -26.70)
>DroYak_CAF1 122001 96 - 1
AAAUA------CACGCAGCAUUAGCCACAACUAACAUGACAUGCGCCAAAUUAUGCUGCCAAUUUCGCAGGUGGGGAGCGUAAGUCAUGCAAAGCGAACAGC
.....------..(((.((....)).........((((((.((((((...((((.((((.......)))))))).).))))).))))))....)))...... ( -25.50)
>consensus
AAAUA______CACGCAGCAUUAGCCACAACUAACAUGACAUGCGCCAAAUUAUGCUGCCAAUUUCGCAGGUGGGGAGCGUAAGUCAUGCAAAGCGAACAGC
.............(((.((....)).........((((((.((((((...((((.((((.......)))))))).).))))).))))))....)))...... (-25.50 = -25.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:12 2006