Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,858,881 – 3,858,973 |
Length | 92 |
Max. P | 0.657954 |
Location | 3,858,881 – 3,858,973 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 72.47 |
Mean single sequence MFE | -27.32 |
Consensus MFE | -14.53 |
Energy contribution | -14.34 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.22 |
Mean z-score | -1.80 |
Structure conservation index | 0.53 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657954 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3858881 92 + 20766785 GCCCCAGCGGGUUGGCAGCGUAGAAUGCCAAUGGAAUGAGUGGCAGGUUAGGGGGAGUUCGGCCAGAUGUCAUUUGAUAU-----------UUUAGGGGUAAA (((((.....(((((((........))))))).....(((((((((((..((.....))..)))...)))))))).....-----------....)))))... ( -28.90) >DroSec_CAF1 114669 92 + 1 GCCCUAUCGGGUUGGCAACGUAGAUUGCCAAUGGAAUGAGUGGCAGGUGAGGGGGAGUUUGGCCAGAUGUCAUUUGAUAU-----------UUUAGGGGUAAA (((((.....((((((((......)))))))).....(((((((((((.(((.....))).)))...)))))))).....-----------....)))))... ( -26.90) >DroEre_CAF1 115764 76 + 1 GCCCCAGCGGCCUGGCAACGUAGAAU----------------GCUGGUGAGGGGGAGUUCAGCCAGAUGUCAUUGGAUAU-----------UUGAGGGGUAAA (((((...((((..(((........)----------------))..)((((......)))))))(((((((....)))))-----------))..)))))... ( -24.90) >DroYak_CAF1 112849 92 + 1 GCCCCAGCGGCAUGGCGACAUAGAAU-----------GGGUUGCUGGAAGGGGGGAGUUCAGCCAGAUGCCAUUUGAUAUUUGAAGGGUAUUUGAGGGGUAGA (((((...((((((....)))....(-----------(..((.((.......)).))..)))))(((((((.((..(...)..)).)))))))..)))))... ( -28.60) >consensus GCCCCAGCGGCUUGGCAACGUAGAAU___________GAGUGGCAGGUGAGGGGGAGUUCAGCCAGAUGUCAUUUGAUAU___________UUGAGGGGUAAA (((((......((((((((.....................................)))..)))))(((((....)))))...............)))))... (-14.53 = -14.34 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:10 2006