Locus 817

Sequence ID 2R_DroMel_CAF1
Location 3,856,009 – 3,856,115
Length 106
Max. P 0.528732
window1429

overview

Window 9

Location 3,856,009 – 3,856,115
Length 106
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 85.02
Mean single sequence MFE -32.78
Consensus MFE -21.81
Energy contribution -23.62
Covariance contribution 1.81
Combinations/Pair 1.04
Mean z-score -1.54
Structure conservation index 0.67
SVM decision value -0.01
SVM RNA-class probability 0.528732
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3856009 106 - 20766785
UCCAUGCUCCAUGCUCCAUCUCCAUGCUGCAUGCUCCAU-CUCCAUGCGGCAUGCUGCACACUCCAAGUUCCAGCUGGAUCGAUCGCAUAUAGUCGUUUGGCGAGCG
.....((((.((((...((((((((((((((((......-...))))))))))((((...((.....))..)))).)))..))).))))...(((....))))))). ( -31.90)
>DroSec_CAF1 111852 106 - 1
UCCAUGCUGCAAGCUCCAUCUCCAAGCUGCAUGCUCCAU-CUCCAUGCGGCAUGCUGCACACUCCAAGUUCCACCUGGAUCGAUCGCAUAUAGUCGUUUGGCGAGCG
............((((.........((.(((((((.(((-....))).))))))).)).....(((((.(((....))).((((........))))))))).)))). ( -28.80)
>DroEre_CAF1 112955 107 - 1
UCGACACUCGAUGCUCCAUCUCCAAGCUCCAUGCUGCAUGCUGCAUGCUGCAUGCUGCAUGCUCCAGGUUCCAGCGGGAUCGAUCGCAUAUAGUCGUUUGGCGAGCG
(((.....))).((((.....((((((..(((((.((((((.(((((...))))).))))))....((((((...))))))....))))...)..)))))).)))). ( -37.10)
>DroYak_CAF1 110067 95 - 1
UC-------GAUGCUCCAUCUCCAAGCUCC-----CCAUGCCGCAUGCUGCAUGCAGCAUGCUCCAAGUUCCAGCUGGAUCGAUCGCAUAUAGUCGUUUGGCGAGCG
..-------...((((.....((((((..(-----..((((.((((((((....))))))))((((.((....))))))......))))...)..)))))).)))). ( -33.30)
>consensus
UCCAUGCUCCAUGCUCCAUCUCCAAGCUCCAUGCUCCAU_CUCCAUGCGGCAUGCUGCACACUCCAAGUUCCAGCUGGAUCGAUCGCAUAUAGUCGUUUGGCGAGCG
............((((.........((.(((((((.(((.....))).))))))).)).....(((((.(((....))).((((........))))))))).)))). (-21.81 = -23.62 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:09 2006