Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,854,687 – 3,854,787 |
Length | 100 |
Max. P | 0.599108 |
Location | 3,854,687 – 3,854,787 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 81.45 |
Mean single sequence MFE | -25.22 |
Consensus MFE | -15.85 |
Energy contribution | -15.79 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.12 |
Mean z-score | -1.74 |
Structure conservation index | 0.63 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3854687 100 - 20766785 UAAUGAAAUUUGCGUGAUUCAAGCGGAGCACGCACUAGGCGAUGCCAAUAGCAGCAACAACAAUCGCCGGAGGCGUUCUCAAUACAACAGCA---ACAGCUAC .........((((((.......)).(((.((((.((.((((((...................))))))..)))))).))).........)))---)....... ( -23.61) >DroPse_CAF1 103986 88 - 1 UAAUGAAAUUUGCGUGAUUCAAGCAGAGCACGCACUAGGCGAUGCCAAUAA---CAACAACAAUUGCCAUUGGCAUGCC------AGGG------GCAACAAC ..........((((((.(((.....)))))))))((.(((.((((((((..---(((......)))..)))))))))))------.))(------....)... ( -28.60) >DroEre_CAF1 111616 100 - 1 UAAUGAAAUUCGCGUGAUUCAAGCGGAGCACGCACUAGGCGAUGCCAAUAGCAGCAACAACAAUCGCCGGAGGCGUUCUCAAUACAACAGCA---ACAGCUAC ..........(((.........)))(((.((((.((.((((((...................))))))..)))))).)))........(((.---...))).. ( -25.21) >DroYak_CAF1 108774 103 - 1 UAAUGAAAUUUGCGUGAUUCAAGCGGAGCACGCACUAGGCCAUGCCAAUAGCAGCAACAACAAUCGCCGGAGGCGUUCUCAAUACAACAGCAACAACAGCUAC ..........((((((.(((....))).))))))...(((...)))..((((.............(((...)))(((........)))..........)))). ( -19.90) >DroAna_CAF1 105351 103 - 1 UAAUGAAAUUUGCGUGAUUGAAGCCGAGCACGCACUAGGCGAUGCCAAUACCAGCAACAACAAUCGCCGGAGGCGUAUUCAAUACAACAAGCACGGCAGCAAC .........((((..(((((..(((.((......)).)))(.(((........))).)..)))))((((...((................)).)))).)))). ( -25.39) >DroPer_CAF1 104911 88 - 1 UAAUGAAAUUUGCGUGAUUCAAGCAGAGCACGCACUAGGCGAUGCCAAUAA---CAACAACAAUUGCCAUUGGCAUGCC------AGGG------GCAACAAC ..........((((((.(((.....)))))))))((.(((.((((((((..---(((......)))..)))))))))))------.))(------....)... ( -28.60) >consensus UAAUGAAAUUUGCGUGAUUCAAGCGGAGCACGCACUAGGCGAUGCCAAUAGCAGCAACAACAAUCGCCGGAGGCGUUCUCAAUACAACAGCA___ACAGCAAC ..(((......(((((.(((.....))))))))....((((((...................)))))).....)))........................... (-15.85 = -15.79 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:08 2006