Locus 815

Sequence ID 2R_DroMel_CAF1
Location 3,846,337 – 3,846,436
Length 99
Max. P 0.515668
window1427

overview

Window 7

Location 3,846,337 – 3,846,436
Length 99
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 79.79
Mean single sequence MFE -30.50
Consensus MFE -19.14
Energy contribution -20.03
Covariance contribution 0.89
Combinations/Pair 1.21
Mean z-score -1.39
Structure conservation index 0.63
SVM decision value -0.04
SVM RNA-class probability 0.515668
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3846337 99 + 20766785
GUG---CCGAAACACCCCUCCACGCCGCUCAAAGCAACCACAAGCAGUUAGCUUGGUUAGCCAGAGCAGCUGUUUUGGGGUCGUGCCCCCUUGUGACCCACC
(((---.....(((......((((((((.....))..(((.((((((((.((((((....))).)))))))))))))))).))))......)))....))). ( -30.20)
>DroSec_CAF1 102221 99 + 1
GUG---CCGAAACACCCCUCCACACUCGUCAAAGCAACCACAAGCAGUUAGCUCGGUUAGCCAGAGCAGCUGUUUUGGGGUCGUGCCACCUUAUGACCCUCC
(((---..((........))..))).............((.((((((((.((((((....)).))))))))))))))((((((((......))))))))... ( -29.30)
>DroSim_CAF1 119701 99 + 1
GUG---CCGAAACACCCCUCCACGCUGCUCAAAACAACCACAAGCAGUUAGCUCGGUUAGCCAGAGCAGCUGUUUUGGGGUCGUGCCACCUUGUGACUCUCC
(((---.((....(((((...(((((((((.....((((...(((.....))).)))).....))))))).))...)))))..)).)))............. ( -30.40)
>DroEre_CAF1 103561 98 + 1
GUG---CCGAAACACC-CACCACUCCGCUCAAAGCAACCACAAGCAGUUAGCUCGGUUAGCCAGAGCAGCUGUUUUGGGGUCGUGCCCCCGUGCGACCCCCC
(((---......))).-.........((.....))......((((((((.((((((....)).)))))))))))).(((((((..(....)..))))))).. ( -36.10)
>DroYak_CAF1 100615 98 + 1
GGG---CCGAAACACC-CUCCUCUCCGGUCGAAGCAACCACAAGCAGUUAGCUCGGUUAGCCAGAGCAGCUGUUUUGGGGUCGUGCCCCCGUGUUACCCUCC
(((---((((....((-(........(((.......)))..((((((((.((((((....)).)))))))))))).))).))).)))).............. ( -34.20)
>DroAna_CAF1 97835 84 + 1
UCCCAACAGUAUCCCGC----------CUCCA--AAACCACAAACCGUUUGCU-GGUUAGCCAGAACAGCUGCUUUGGGGUCGGGCACCCUC-UG---CAU-
......(((...((((.----------(((((--(((((((((.....))).)-))))(((.((.....))))))))))).))))......)-))---...- ( -22.80)
>consensus
GUG___CCGAAACACCCCUCCACGCCGCUCAAAGCAACCACAAGCAGUUAGCUCGGUUAGCCAGAGCAGCUGUUUUGGGGUCGUGCCCCCUUGUGACCCUCC
.....................................(((.((((((((.((((((....)).)))))))))))))))(((((((......))))))).... (-19.14 = -20.03 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:07 2006