Locus 812

Sequence ID 2R_DroMel_CAF1
Location 3,828,749 – 3,828,844
Length 95
Max. P 0.963175
window1420

overview

Window 0

Location 3,828,749 – 3,828,844
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 89.63
Mean single sequence MFE -26.34
Consensus MFE -20.58
Energy contribution -20.18
Covariance contribution -0.40
Combinations/Pair 1.23
Mean z-score -2.33
Structure conservation index 0.78
SVM decision value 1.55
SVM RNA-class probability 0.963175
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3828749 95 + 20766785
UGCCGAAUAGGGGAUGAAAUGAAAUUUCGUAAGCGAAUGAGCAAUGCGGAGUUAGUUCGUUUACGGCGUAUUGUAAAGGGGAUACACAUCCAACU
..((.....))(((((..........((((((((((((.(((........))).)))))))))))).(((((.(....).))))).))))).... ( -28.30)
>DroSec_CAF1 84837 91 + 1
UGCCGAAUAGGGGAUGAA----AAUUCCGUAAGCGAAUGAGCAAAGCGGAGUUAGUUCGUCUACGGCGUAAUGCAAAGGGGAUACACAUCCAACU
.((((......(((((((----((((((((..((......))...))))))))..))))))).))))............((((....)))).... ( -27.20)
>DroSim_CAF1 102495 91 + 1
UGCCGAAUAGGGGAUGAA----AAUUCCGUAAGCGAAUGAGCAAUGCGGAGUUAGUUCGUCUACGGCGUAAUGCAAAGGGGAUACACAUCCAACU
.((((......(((((((----(((((((((.((......))..)))))))))..))))))).))))............((((....)))).... ( -28.00)
>DroEre_CAF1 86510 91 + 1
UGCCGAAUAGGGGAUGAA----AAUUCCGUAAACGAAUGAGCACUGCGGAGUUAGUUUGUUUACGGCGAAAUGUAAGUGGGAUACACGUCUUACU
.(((......(((((...----.)))))((((((((((.(((........))).)))))))))))))........((((((((....)))))))) ( -30.00)
>DroYak_CAF1 82893 91 + 1
UGCCGAAUAGGGGAUGAA----AAUUCCGUAAACGAAUGAGCAAUACGGAGUUAGUUUGUCUACAGAGAAAUGUAAAGGGGAUACACAUCUAACU
..((.....))(((((..----(((((((((..(......)...))))))))).((((.((((((......)))..))).)).)).))))).... ( -18.20)
>consensus
UGCCGAAUAGGGGAUGAA____AAUUCCGUAAGCGAAUGAGCAAUGCGGAGUUAGUUCGUCUACGGCGUAAUGUAAAGGGGAUACACAUCCAACU
(((((......(((((((....((((((((..((......))...))))))))..))))))).)))))...........((((....)))).... (-20.58 = -20.18 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:00 2006