Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,824,974 – 3,825,108 |
Length | 134 |
Max. P | 0.998775 |
Location | 3,824,974 – 3,825,077 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 88.67 |
Mean single sequence MFE | -30.18 |
Consensus MFE | -21.22 |
Energy contribution | -22.38 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.13 |
Mean z-score | -2.97 |
Structure conservation index | 0.70 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3824974 103 - 20766785 --CUUAUUGCUGCACUUCAAUGUCGGAUUUCCGUUCGGGGAUCCGACACUUCUUCACAAGAAAUCCUUGAAUGUAAUCCUCGUUGCAUAUUGCGGUCAUCGCUUC --......((((((......((((((((..((....))..))))))))........((((.....)))).(((((((....)))))))..))))))......... ( -32.50) >DroSec_CAF1 81003 105 - 1 CCCCUCCUGCUGCACUUCAAUGUCGGACUUCCGCUCGGGGAUCCGACACUUCUUCACAAGAAAUCCUUGAAUGUAAUCCUCGCUGCAUAUUGCGGUCAUCGCUUC ........((((((.((((((((((((..(((....)))..))))))).((((.....))))....)))))))))......(((((.....)))))....))... ( -27.90) >DroSim_CAF1 98494 105 - 1 CCCCUCCUGCUACACUUCAAUGUCGGAUUUCCGCUCGGGGAUCCGACACUUCUUCGCAAGAAAUCCUUGAAUGUAAUCCUCGCUGCAUAUUGCGGUCAUCGCUUC ........((((((.(((((((((((((..((....))..))))))))....(((....)))....)))))))))......(((((.....)))))....))... ( -34.90) >DroEre_CAF1 82364 105 - 1 CCUUUACAGCUGCACUUCAGUGUCGGAUUUCCGUUGGAGGAUCCAACCCUUCUGCACAAGAAAUCCUUGAACGUAAUCCUCGCUGCAUAUUGCGGUCAUCGCUUC ........((((((...(((((..(((((..((((.((((((.......((((.....)))))))))).)))).))))).))))).....))))))......... ( -30.71) >DroYak_CAF1 78963 105 - 1 CUUAUUCAACUGCCCUUUAAUGACGGAUUUCCGGUCGAGGAUCCAACCCUUCUUCACAAGAAAUCCUUGAACGUAAUCCUCGCUGCAUAUUGCGGUCAUCGCUUC ...................((((((((((..((.((((((((.......((((.....)))))))))))).)).))))).(((........))))))))...... ( -24.91) >consensus CCCCUACUGCUGCACUUCAAUGUCGGAUUUCCGCUCGGGGAUCCGACACUUCUUCACAAGAAAUCCUUGAAUGUAAUCCUCGCUGCAUAUUGCGGUCAUCGCUUC ........((((((.(((((.(((((((((((....)))))))))))..((((.....))))....)))))))))......(((((.....)))))....))... (-21.22 = -22.38 + 1.16)
Location | 3,825,011 – 3,825,108 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 77.72 |
Mean single sequence MFE | -21.61 |
Consensus MFE | -12.82 |
Energy contribution | -14.02 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.00 |
Mean z-score | -3.06 |
Structure conservation index | 0.59 |
SVM decision value | 3.22 |
SVM RNA-class probability | 0.998775 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3825011 97 - 20766785 UCCACACUCGAAAAUAUUUUUCAGCACCACC----CUUAUUGCUGCACUUCAAUGUCGGAUUUCCGUUCGGGGAUCCGACACUUCUUCACAAGAAAUCCUU .........(((.........(((((.....----.....)))))........((((((((..((....))..))))))))....)))............. ( -24.40) >DroSec_CAF1 81040 101 - 1 UCCACUGCCGAACAUUGUUUUCAGCUCCACCUUCCCCUCCUGCUGCACUUCAAUGUCGGACUUCCGCUCGGGGAUCCGACACUUCUUCACAAGAAAUCCUU ....((...(((.((((....((((................)))).....))))((((((..(((....)))..)))))).....)))...))........ ( -20.39) >DroSim_CAF1 98531 101 - 1 UCCACACGCGAAAAUUAUUUUCAGCUCCACCUUCCCCUCCUGCUACACUUCAAUGUCGGAUUUCCGCUCGGGGAUCCGACACUUCUUCGCAAGAAAUCCUU .......(((((..........(((................))).........((((((((..((....))..))))))))....)))))........... ( -27.29) >DroEre_CAF1 82401 101 - 1 UUCACACUCUCAAAUAGUUUUCAGCGCUACCAUCCUUUACAGCUGCACUUCAGUGUCGGAUUUCCGUUGGAGGAUCCAACCCUUCUGCACAAGAAAUCCUU ...(((((.......(((...((((................)))).)))..))))).(((((((.((.(((((.......))))).))....))))))).. ( -20.99) >DroYak_CAF1 79000 90 - 1 UCCACACAUAAAAAU-----------CUACCAUCUUAUUCAACUGCCCUUUAAUGACGGAUUUCCGGUCGAGGAUCCAACCCUUCUUCACAAGAAAUCCUU ...............-----------...............................(((((((..((.(((((.........)))))))..))))))).. ( -15.00) >consensus UCCACACUCGAAAAUAGUUUUCAGCUCCACCAUCCCCUACUGCUGCACUUCAAUGUCGGAUUUCCGCUCGGGGAUCCGACACUUCUUCACAAGAAAUCCUU ......................................................(((((((((((....)))))))))))..((((.....))))...... (-12.82 = -14.02 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:59 2006