Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,823,460 – 3,823,656 |
Length | 196 |
Max. P | 0.989972 |
Location | 3,823,460 – 3,823,554 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 96.10 |
Mean single sequence MFE | -17.68 |
Consensus MFE | -15.91 |
Energy contribution | -15.97 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -2.06 |
Structure conservation index | 0.90 |
SVM decision value | 2.19 |
SVM RNA-class probability | 0.989972 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3823460 94 - 20766785 UUGCCCUCCAGUUUUUGUGCAAUUUAGCCAGGAAACUGAAAAAGCAAAACUUUAAUCAACAUUUUCAUUUGGUUUAUUGCAUAAAACAUUUCUC ..........(((((.(((((((..((((((....)((((((...................))))))..))))).))))))))))))....... ( -18.41) >DroSec_CAF1 79905 94 - 1 UUGCCCUCCAGUUUUUGUGCAAUUUAGCCAGGAAACUGAAAAAGCAAAACUUUAAUCAACAUUUUCAUUUGGUUUAUUGCAUAAAACAUUUCUC ..........(((((.(((((((..((((((....)((((((...................))))))..))))).))))))))))))....... ( -18.41) >DroSim_CAF1 96977 94 - 1 UUGCCCUCCAGUUUUUGUGCAAUUUAGCCAGGAAACUGAAAAAGCAAAACUUUAAUCAACAUUUUCAUUUGGUUUAUUGCAUAAAACAUUUCUC ..........(((((.(((((((..((((((....)((((((...................))))))..))))).))))))))))))....... ( -18.41) >DroEre_CAF1 80675 94 - 1 UUGCCCUCCAGUUUUUGUGCAAUUUAGCCAGGAAACUGGGAAAGCAAAACUUUAAUCAACAUUUUCAUUUGGUUUAUUGCAUAAAACAUUUCUC ..........(((((.(((((((..(((((.((((.((..((((.....))))......)).))))...))))).))))))))))))....... ( -19.70) >DroYak_CAF1 77243 94 - 1 UUGCCCUCCAGUUUUUGUGCAAUUUAGCCAGGAAACUGAAAAAGCAAAACUUUAAUCAACAUUUUCAUUUGGUUUAUUGCAUAAAACAUUUCUC ..........(((((.(((((((..((((((....)((((((...................))))))..))))).))))))))))))....... ( -18.41) >DroAna_CAF1 77905 93 - 1 UUACCUUCUGCUUUUUGUUCAAUUUGG-CAGGAAAAUGAAAAAGCAAAACUUUAAUCAACAUUUUCAUUUGGUUUAUUGCAUAAAACAUUUCUC ..((((((((((..((....))...))-)))))(((((((((...................))))))))))))..................... ( -12.71) >consensus UUGCCCUCCAGUUUUUGUGCAAUUUAGCCAGGAAACUGAAAAAGCAAAACUUUAAUCAACAUUUUCAUUUGGUUUAUUGCAUAAAACAUUUCUC ............(((((((((((..(((((.((((.(((.((((.....))))..)))....))))...))))).)))))))))))........ (-15.91 = -15.97 + 0.06)
Location | 3,823,554 – 3,823,656 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 77.35 |
Mean single sequence MFE | -26.22 |
Consensus MFE | -10.70 |
Energy contribution | -10.62 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.14 |
Mean z-score | -2.34 |
Structure conservation index | 0.41 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950776 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3823554 102 + 20766785 UCGG-AGGGGAGAGCACGUG----UGUAUGGAGUGUGUGUUCUUAACAUAACACAUAAACACAAGUACAUACACA----A-----CUCUGGAGUACUUUUUAAAGGAAAACGAACU ((((-((..(.(....)(((----(((((.(..((((((((........))))))))..)....)))))))).).----.-----))))))(((.((((((....))))).).))) ( -23.40) >DroSec_CAF1 79999 107 + 1 UCGAAAGGGGAAAGCACGUGUGUGUGUAUGGAGUGUGUGUUCUUAACAUAACACAUAAACACAAGUACAUACACA----A-----CUCUAGAGUAUUUUUUAAAGGAAAACGUACU ((....))....((.((((((((((((((.(..((((((((........))))))))..)....)))))))))).----.-----((.(((((....))))).))....)))).)) ( -27.60) >DroSim_CAF1 97071 107 + 1 UCGAAAGGGGAAGGCACGUGUGUGUGUAUGGAGUGUGUGUUCUUAACAUAACACAUAAACACAAGUACAUACACA----U-----CUCUAGAGUAUUUUUUAGAGGAAAACGUACU ((....))....((.((((((((((((((.(..((((((((........))))))))..)....)))))))))).----(-----((((((((....)))))))))...)))).)) ( -34.10) >DroEre_CAF1 80769 99 + 1 UCUG-AGGGGAAUC-ACGUG----UGUAUAGAGUGUGUGUUCUUAACAUAACACAUAAACAUAAGUACCUAUACAUACAACUCUUCUCUAGUUUAUUUUUUAAGG----------- ...(-((((((...-..(((----(((((((..((((((((........)))))))).((....))..))))))))))...))))))).................----------- ( -25.10) >DroYak_CAF1 77337 96 + 1 UCUG-AGGGGAAUCGACGUG----UGUGUAGAGUGCGUGUUCUUAACAUAACAUAUAAACAUAAGUACAUACACA----UCUCGUCUCUAGUUUAUUUUUUAAAG----------- ....-.(((((..(((.(((----(((((...(((((((((..((........))..)))))..)))))))))))----).))))))))................----------- ( -20.90) >consensus UCGG_AGGGGAAAGCACGUG____UGUAUGGAGUGUGUGUUCUUAACAUAACACAUAAACACAAGUACAUACACA____A_____CUCUAGAGUAUUUUUUAAAGGAAAACG_ACU .....(((((......)(((....(((((.(..((((((((........))))))))..)....)))))..)))...........))))........................... (-10.70 = -10.62 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:57 2006